Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 seq89 123 2e-23 >seq3 Length=1295254 Score = 136 bits (150), Expect = 3e-27 Identities = 225/325 (69%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||| ||| | ||| | || | | | || ||| ||| | | ||| |||| || Sbjct 1014557 TTAAACAGACATTTTCATATCAAGTTTGGCATGAGGGCGATAATCATGTAAAATAAAATC 1014498 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 ||| |||| ||||| || | || ||||||||||| ||||| || || || || Sbjct 1014497 ATCAAAGGTAAAATCATCTATAGAGTCAATTTTTCTAGCAAAGCTAAGGGTAGGGAAGGG 1014438 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 | || || || | ||| || || ||||| ||||| || ||||| | ||||| Sbjct 1014437 GGTTGGTTCACGAGTAAGTTGCTGATTGAGTGCATCCATGTGGTCCACATAAACGTGAGT 1014378 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 || || || |||||||||||||| ||||| | | || ||| |||||||||||||| | Sbjct 1014377 GTCGCCCATCGTATGGATAAACTCGCCAGGTTCCAAATCAGTAACATGAGCAATCATTCT 1014318 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 ||||| | || ||| || || || || || || ||||| ||||| ||| |||| Sbjct 1014317 AGTTAGCAAAGCATAAGAGGCGATATTGAAGGGAACACCTAATCCCATGTCACAAGATCG 1014258 Query 101833 TTGATACAGTTGACAGGAAAGCTTT 101857 |||||| || |||||| ||| || Sbjct 1014257 TTGATAGAGAACACAGGATAGCCTT 1014233 >seq89 Length=1828303 Score = 123 bits (136), Expect = 2e-23 Identities = 212/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA 101593 ||||||| ||| | ||| | | | | ||| || | ||||| | ||| |||| |||| Sbjct 884707 TAAACAGACATTTTCATATCCAGCTTGGCGTGAGGATAATAGTCATGTAAAATAAAGTCA 884766 Query 101594 TCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGT 101653 || ||||||| ||||| | || ||||| |||||| |||| || || || ||| Sbjct 884767 TCAAAAGTAAAGTCGTCAATCGAGTCAATTTTTCTTGCAAATGTAAGGGTAGGGAAGGGT 884826 Query 101654 CTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCA 101713 | || || |||| ||| || || ||||| | ||||| ||||| | |||| | Sbjct 884827 CGTGGCTCACGGGTCACTTGCTCCTTGAGGGCATCCAAATGATCGACATACACATGAGTA 884886 Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773 || || || ||||| || || || ||||| | | || ||| |||||||||||||| | Sbjct 884887 TCACCCATCGTATGAATGAATTCACCAGGATCCAAATCAGTTACATGAGCAATCATCCTG 884946 Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTT 101833 || | | || ||| ||||| || || || || ||||| |||||||| ||||| | Sbjct 884947 GTCAGCAAAGCATAAGATGCAATATTGAAAGGTACACCTAATCCCATATCGCATGATCGT 885006 Query 101834 TGATACAG 101841 ||||| || Sbjct 885007 TGATAAAG 885014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250786141594