Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq67 116 3e-21 seq34 89.7 4e-13 >seq67 Length=1953875 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||| || |||||||||||||| ||||| | Sbjct 1481347 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 1481406 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || | ||||| || ||| |||| | | ||||| || || Sbjct 1481407 AGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGA 1481466 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||||||||||| | | ||| || ||| | ||| | Sbjct 1481467 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACT 1481526 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| |||||||| || || || |||||||| |||||||| Sbjct 1481527 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||| || |||||||| ||||| ||||| | Sbjct 1481575 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1481634 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||| |||||| || ||| | || || | || ||||| || Sbjct 1481635 AGAGTGCGGCCATCTTCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGA 1481694 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| ||||| ||||| | ||| | || || ||| | Sbjct 1481695 ATACCTTCCTTGTCTTGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACT 1481754 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGA 21180 |||| ||||||||||||||| || | ||||| || || |||||||| ||||| Sbjct 1481755 TCCAAGGTAATGGTCTTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTTTGA 1481807 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||| || |||||||||||||| ||||| | Sbjct 1416122 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 1416181 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||| ||||| || ||| | || || | || ||||| || Sbjct 1416182 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1416241 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||| |||||||| || | | | | | || || ||| | Sbjct 1416242 ATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACT 1416301 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 |||| ||||||||||||||| || | || ||||| || |||||||| ||||| Sbjct 1416302 TCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTTGAA 1416354 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| ||| | ||| || |||||||| ||||| || || | Sbjct 1415437 TCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGA 1415496 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | || |||| || || || || |||| | | |||||||| || Sbjct 1415497 CAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGG 1415556 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||||||| || | | ||| || ||| | ||| Sbjct 1415557 AATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCAC 1415616 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| |||||||| || || || |||||||| |||||||| Sbjct 1415617 TTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | || || |||||||||||||| ||||||| || || || | || Sbjct 1480906 AGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCT 1480965 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || || || ||| | || | || || ||||| || | ||||||||||| Sbjct 1480966 TCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCT 1481025 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||||||||||| | | | | | ||| | ||| ||||| ||||| ||| Sbjct 1481026 TGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTC 1481085 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || ||||| |||||||| Sbjct 1481086 TTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | ||| || |||||||| ||||| || || | Sbjct 1481119 CCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAA 1481178 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||| || || || ||| | || || | || || || || Sbjct 1481179 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGG 1481238 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||||||||||| | | | | | ||| | ||| | Sbjct 1481239 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACT 1481298 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 1481299 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 >seq34 Length=2241197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | || || |||||||||||||| ||||||| | ||| | || Sbjct 1642869 AGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCT 1642810 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || | || || || || |||| |||| || || || ||| | ||||||||||| Sbjct 1642809 TCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCT 1642750 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 || ||||| || || | ||| | |||| | || ||||| ||||||||| Sbjct 1642749 TGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTC 1642690 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || ||||| |||||||| |||| Sbjct 1642689 TTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTTGA 1642653 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | | |||| || || || || ||||||||||| || || || | Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || |||| || || || ||| | || || | ||||| || || Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||||||| || | | ||| || ||| || ||| | Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| || ||||| || | || |||||||| |||||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258716249304