Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq67 122 9e-23 seq4 89.7 5e-13 seq1 84.2 2e-11 >seq67 Length=1953875 Score = 122 bits (134), Expect = 9e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| ||||| || || ||||| ||||| ||| | || || ||| | Sbjct 1481805 AAACATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATC 1481746 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | | | ||| ||||||| | ||||| || || || || | || Sbjct 1481745 CTCCGACTCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGA 1481686 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| ||||||| || || |||||| |||| || | ||||| ||| ||||| Sbjct 1481685 CCAACAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTA 1481626 Query 40866 CAACATCCAGAAGGA 40880 ||||||||| ||||| Sbjct 1481625 CAACATCCAAAAGGA 1481611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || ||||| ||||| ||| | || || ||| || Sbjct 1416351 AACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCC 1416292 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | | | |||| ||||||| | || || || || || || | ||| Sbjct 1416291 TCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGAC 1416232 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| ||||||| || || ||||| |||| || | || || || |||||| Sbjct 1416231 CAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTAC 1416172 Query 40867 AACATCCAGAAGGA 40880 ||||| || ||||| Sbjct 1416171 AACATTCAAAAGGA 1416158 >seq4 Length=1266665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 214/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 || || || || || ||||| || || || ||| |||||||||| || || ||| | Sbjct 714730 GAACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTTGCCTCT 714789 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || |||||||||||||| || | ||||| || |||| ||| ||| || || ||| Sbjct 714790 ATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAACTGATC 714849 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAG 117214 | ||||| ||||| ||| |||||||| || | |||| ||| | || Sbjct 714850 AGTCGTGACGAAGGTCTCCATACTGACTTTGCATGCCTTTTGTTTGGTCATCTTCATCAC 714909 Query 117215 CGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGC 117274 | ||| ||| | || ||| ||| || || || || || || ||||| || Sbjct 714910 CAACCCAGCAACTCTCGTGTCCTGGAAATTATCGTTGAAGCCGTTGCTATCGAACAAGAA 714969 Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCA 117333 || | || || || | |||||| |||| | || | || ||| |||| ||||| || Sbjct 714970 TTTTTGACAGATGCTTTACCGGTGGCTCTGATTGGTATGAA-TGCCAAACTGATGTGCCA 715028 Query 117334 ATACATCGAGTTCGTCGCCGA 117354 |||||| || || || ||||| Sbjct 715029 ATACATTGAATTTGTGGCCGA 715049 >seq1 Length=3895514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 || || || |||||||| || || || || || ||||||| || || || ||| || Sbjct 3274593 GAACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCC 3274652 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || |||||||||||||| || | ||||| || |||| ||| ||| || | ||| Sbjct 3274653 ATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATC 3274712 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 | | ||||| ||||| || |||||||| ||||| |||| Sbjct 3274713 TGTCGTGACGAAGGTCTTCACACTGACTTTGCTTGTTTATTGTT 3274756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218594617440