Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq67 118 9e-22 seq34 118 9e-22 >seq67 Length=1953875 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||||| || ||||| ||||||||||| | |||||| ||| || Sbjct 1481136 CACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1481195 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || ||||| |||||||||| || ||||||||||| || || ||||||||| Sbjct 1481196 CAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 1481255 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| |||||||| || | || | | ||| | ||| || || || | || | || || Sbjct 1481256 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481315 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| || ||||| Sbjct 1481316 GCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || |||||||||||||| || | |||||| ||| || Sbjct 1481364 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481423 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| ||||| | || | ||| |||||||| ||||| || || ||||||||| Sbjct 1481424 TAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTG 1481483 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| |||||||| || | |||| | ||| | ||| || || || | || | || || Sbjct 1481484 AATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481543 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| || ||||| Sbjct 1481544 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || |||||||||||||| || | ||| || ||| || Sbjct 1416139 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1416198 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| ||||| |||||||||| || || || ||||| || || ||||| ||| Sbjct 1416199 CAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 1416258 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||||||||| || | || | || ||| | | || || || | ||| | || || Sbjct 1416259 GATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1416318 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || ||||| || || ||||| |||||| Sbjct 1416319 GCCAGTAAGAGTCTTGACGAAAATTTGCATG 1416349 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || || |||||||||||||| || || |||||| ||| || Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTC 1480967 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || ||||| |||| | || || || |||||||| || || ||||||||| Sbjct 1480968 CAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTG 1481027 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| |||||||| || | || | | ||| | ||| || || || | || | || || Sbjct 1481028 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTT 1481087 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || ||||| || ||||| Sbjct 1481088 GCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || || || ||||| ||||||||||| || ||| || ||| || Sbjct 1415455 CACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTC 1415514 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || || ||| | || | ||| ||||| || ||||| || || ||||||||| Sbjct 1415515 CAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTG 1415574 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||||||||||| | |||| | ||| | || | || || || | || | || | Sbjct 1415575 AATCTTTTGTTTAACATTGTCGATAGAGTCAGATGAT-TCCACTTCCAGAGTAATAGTCT 1415633 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||| || ||||| || ||||| Sbjct 1415634 TGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || ||||| |||||||| || | |||||| ||| || Sbjct 1415683 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415742 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || ||||| | || | ||| ||||||||||| || || || ||||| ||| Sbjct 1415743 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1415802 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||||| || || | |||| | ||| | || | || || || | || | || | Sbjct 1415803 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGAT-TCCACTTCCAGAGTAATAGTCT 1415861 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||| || ||||| || ||||| Sbjct 1415862 TGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||| || ||||| |||||||| || | |||||| ||| || Sbjct 1415911 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415970 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || || ||||| | || | ||| ||||||||||| || || || ||||| ||| Sbjct 1415971 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1416030 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||||| || || | |||| | ||| | || | || || || | || | || | Sbjct 1416031 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGAT-TCCACTTCCAGAGTAATAGTCT 1416089 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| ||| || ||||| || ||||| Sbjct 1416090 TGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 >seq34 Length=2241197 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || |||| | || |||||||| | ||| || || |||||||| |||||||| Sbjct 1643113 ACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGA 1643054 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || ||| ||| || | || || ||||| |||| ||||| |||||||||||||| Sbjct 1643053 TAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGG 1642994 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||||||| ||| |||||||| || | |||| | ||| | | || || Sbjct 1642993 GATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCAC 1642934 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||||| || || || || ||||| || ||||| Sbjct 1642933 TTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | |||||| || |||||||||||||| || | ||| | ||| || Sbjct 1642867 CACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCTTC 1642808 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | || ||||||||| | || || || || ||||| || || || || ||||||||| Sbjct 1642807 TAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCTTG 1642748 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||||||| || || | |||| | || | || || || | || | || || Sbjct 1642747 AATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTCTT 1642688 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||||| || |||||||| |||||| Sbjct 1642687 GCCGGTAAGAGTCTTAACAAAAATTTGCATG 1642657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829902993048