Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq34 125 8e-24 seq67 102 9e-17 >seq34 Length=2241197 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| || ||| || ||||| || ||||| |||||||||||||||||||||| Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || ||| | || || | ||||| ||||| || || || || ||||| |||| || Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| || |||||||||| ||| | | | | ||| |||||||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGA-CGTTGTCGATAGAGTCAGAGGATTCCAC 1642934 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| || || ||||| |||||||||||||| Sbjct 1642933 TTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | ||| ||||||||||| ||||| || | | ||| | | Sbjct 1642873 ACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCC 1642814 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || |||| ||||| |||||||| || ||||| || || || | || | | ||||| Sbjct 1642813 ATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTT 1642754 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||||| |||| | | | | || ||||| || || | || || Sbjct 1642753 GTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAAT 1642694 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || ||||| ||||| |||||||| || Sbjct 1642693 GGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 >seq67 Length=1953875 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| |||| ||||| || | || || | || |||||||| || Sbjct 1416158 TCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAG 1416217 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || || ||||| | || | | ||||| || |||||||||||||| | Sbjct 1416218 ATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGTTTGACATTG 1416277 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | | |||| |||||||| || | || ||||| ||||| || || ||||| || Sbjct 1416278 TCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACG 1416337 Query 43173 AAGATTTGCATTTT 43186 || |||||||| || Sbjct 1416338 AAAATTTGCATGTT 1416351 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 |||||||| || | | ||| | ||||||||| | || |||||||| || |||||| Sbjct 1415432 TATTGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAA 1415491 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || | || ||| || | || || | |||||||| ||||| || | || |||||||| Sbjct 1415492 TCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCA 1415551 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130 | || | | |||||||| || |||||||| | | | | | ||| ||| Sbjct 1415552 GGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGAT 1415611 Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | || || || ||||| || | ||||| |||||||||||||| Sbjct 1415612 TCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 42950 CTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 43009 |||||| || || | | ||| | ||||||||| | || ||||||||||| ||||| Sbjct 1480884 CTATTGGCCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTA 1480943 Query 43010 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || | || ||| || | || || | ||||||||||| || || | ||| || ||||| Sbjct 1480944 GTCCGACAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTC 1481003 Query 43070 GGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCT 43126 || || | | |||||||| || |||||||| | | | | | ||| ||| Sbjct 1481004 GGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT 1481063 Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || | || || || ||||| || || ||||| |||||||||||||| Sbjct 1481064 ---TTCCACTTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | || |||||||| || |||||||||| ||||| || | Sbjct 1481130 ACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCC 1481189 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||||||||| || ||||| || || || |||| || | | ||||| Sbjct 1481190 ATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTT 1481249 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| || |||||||| | | | | | ||| ||| |||||| || | || Sbjct 1481250 GTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCCACTTCCAATGT 1481306 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || | ||||| |||||||||||||| Sbjct 1481307 AATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816928114320