Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq89 87.8 1e-12 >seq3 Length=1295254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 205/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 20470 TATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTG 20529 ||||||||||| ||| |||||| | |||||||| |||||||| || |||||| || Sbjct 1014252 TATCAACGATCTTGTGACATGGGATTAGGTGTTCCCTTCAATATCGCCTCTTATGCTTTG 1014311 Query 20530 CTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATA 20589 || || |||||||| |||||||| ||||| || | || || || |||| || || Sbjct 1014312 CTAACTAGAATGATTGCTCATGTTACTGATTTGGAACCTGGCGAGTTTATCCATACGATG 1014371 Query 20590 GGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAA 20649 || ||| | || |||| | | || || || | | || || | || || || Sbjct 1014372 GGCGACACTCACGTTTATGTGGACCACATGGATGCACTCAATCAGCAACTTACTCGTGAA 1014431 Query 20650 CCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAA 20709 |||| | ||||| || ||| || || || ||| || | ||| | ||||||| Sbjct 1014432 CCAACCCCCTTCCCTACCCTTAGCTTTGCTAGAAAAATTGACTCTATAGATGATTTTACC 1014491 Query 20710 GCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCT 20769 |||||||||| | ||| | | |||| || ||| | || ||| |||||||| Sbjct 1014492 TTTGATGATTTTATTTTACATGATTATCGCCCTCATGCCAAACTTGATATGAAAATGTCT 1014551 Query 20770 GTTTAA 20775 |||||| Sbjct 1014552 GTTTAA 1014557 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 20168 ATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGG 20227 ||||||| | |||| ||| ||| | ||| ||| | || | | | |||||| | | Sbjct 1013857 ATGGATCAAGACAATATTTGGACAAGATTGGGCTTGGTCATCGACGACAAGGGGATCTCG 1013916 Query 20228 GTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAA 20287 | ||||| || || || || ||| |||| ||||| |||||||| ||||| | ||| Sbjct 1013917 GGCCTGTCTACGGGTTCCAGTGGCGACACTTTGGTGCTGAATACATTGACTGTGATACAG 1013976 Query 20288 ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACC 20347 | ||| ||| ||||| |||||||||||||||| | | || || ||||| | || | Sbjct 1013977 ACTATACTGGCCAAGGCGTAGATCAATTACAAACTATCATCGATACTATTAAGAATAATC 1014036 Query 20348 CAAACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 | | ||| | | ||||| |||| || ||||| Sbjct 1014037 CTACCGATCGGCGTATTATCTTATCTGCTTGGAA 1014070 >seq89 Length=1828303 Score = 87.8 bits (96), Expect = 1e-12 Identities = 220/331 (66%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 20053 TTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAA 20112 || || || ||||||||||||| | |||| | || || | |||||||||||| Sbjct 885520 TTGACAACCAAACGGGTATTTTATCGTGCCGTTCTAGAGGAACTCTTATGGTTTATTCGT 885461 Query 20113 G--GATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATG 20170 | || || ||| | | | | ||| ||| || || ||||||||| | ||| Sbjct 885460 GCCGA-CACCAACAGCAATC-ATCTTTCTGAACGCGGGGTCAAGATTTGGGATGGTAATG 885403 Query 20171 GATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTC 20230 | || | | ||| | |||| ||| |||| | |||| | || |||||||| | Sbjct 885402 GGTCAAGGGAATACCTGGACAGTCGTGGGCTTGAGCATCGTCGCCAAGGCGATTTGGGGC 885343 Query 20231 CTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATT 20290 |||| || |||||||||||| |||||||||| || || ||| ||||| | || ||| Sbjct 885342 CTGTCTACGGATTTCAATGGCGACATTTTGGGGCAGACTATATTGACTGTGATACCGATT 885283 Query 20291 ATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAA 20350 || ||| || || || ||||| ||||| || || || || || || ||||| | Sbjct 885282 ATACTGGCCAGGGTGTCGATCAGTTACAGGCAGTGATCCATACTATCAAGACCAACCCTA 885223 Query 20351 ACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 || | | |||||||||| || ||||| Sbjct 885222 CTGATCGTCGGATTATTTTATCTGCGTGGAA 885192 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 20470 TATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTG 20529 ||||||||||| ||||||||| | ||||| ||||||||||||||| |||||| || Sbjct 885011 TATCAACGATCATGCGATATGGGATTAGGTGTACCTTTCAATATTGCATCTTATGCTTTG 884952 Query 20530 CTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATA 20589 || || |||||||| ||||| || ||||| | | ||||| || | || || || Sbjct 884951 CTGACCAGGATGATTGCTCATGTAACTGATTTGGATCCTGGTGAATTCATTCATACGATG 884892 Query 20590 GGAGA 20594 || || Sbjct 884891 GGTGA 884887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183542684830