Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 199 8e-46 seq4 136 8e-27 seq89 93.3 8e-14 >seq1 Length=3895514 Score = 199 bits (220), Expect = 8e-46 Identities = 331/474 (70%), Gaps = 13/474 (3%) Strand=Plus/Plus Query 101892 GCAAT-AACGATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTT 101950 ||||| || ||||| | |||| |||| ||||||||||| || ||||| |||||||| Sbjct 3274576 GCAATGAATCATTTG-CTGAACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTC 3274634 Query 101951 AGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACC 102010 |||||| || || ||||| |||||| ||||||| | ||| | |||||||| | ||| Sbjct 3274635 TCTGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACC 3274694 Query 102011 TCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTG 102070 | ||||||||| || || | | | |||||||||||||| |||||||| || | || Sbjct 3274695 TTCTCCAATGAATTGATCTGTCGTGACGAAGGTCTTCACACTGACTTTGCTTGTTTATTG 3274754 Query 102071 TTGAAAAAGGGTTTTGTTGAT----ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCAC 102126 || ||| | || || | || | | || || | | | |||||| | Sbjct 3274755 TT------TGGTCATATTCATCATCAACCTAGC-AGTGATCGTGTGCGTGAAATCATTGT 3274807 Query 102127 TGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGG 102186 ||||| || ||||||||||||||| | || | | | || |||||| | | || Sbjct 3274808 GGAAGCTGTTGCCATTGAACAAGAATTTTTGACGGATGCTCTCCCTGTTGCTCTTATTGG 3274867 Query 102187 AATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGA 102246 ||||||| |||| | ||| |||| |||||||||||||| || ||| || ||||||| Sbjct 3274868 TATGAACTCCAAGCTTATGTGCCAATACATTGAATTTGTCGCCGATCGTCTCTTGGTTGC 3274927 Query 102247 AATGGGACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTC 102306 | || | ||| ||||| || || || || ||||| |||||||| | || || Sbjct 3274928 TCTTGGTCAAGATAAGCATTACAACTCCACTAATCCCTTTGACTTCATGGATATGATCTC 3274987 Query 102307 CCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 ||| | || |||||||| |||||||| | ||| |||| ||||||||||| Sbjct 3274988 CCTTCAAGGCAAAACCAACTTCTTTGAAAAACGTGTCTCCGATTATCAACGTGC 3275041 >seq4 Length=1266665 Score = 136 bits (150), Expect = 8e-27 Identities = 307/461 (67%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 101903 TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTC 101962 || || |||| ||||||| || ||||| || ||||| ||||||||| ||||| || Sbjct 714724 TTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTT 714783 Query 101963 GCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 || || || |||||| ||||||| | ||| | ||||||| | || | ||||||||| Sbjct 714784 GCCTCTATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAA 714843 Query 102023 TTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGT 102082 | || | | ||||||||||| ||| |||||||||||| | |||| ||| Sbjct 714844 CTGATCAGTCGTGACGAAGGTCTCCATACTGACTTTGCATGCCTTTTGTT------TGGT 714897 Query 102083 TTTGTTGATACCCCATCAAGAGA---AAGGATTCTTGAAATTGTCACTGAAGCCGTCCGA 102139 | || || || | | || | | | || |||||| || ||||||||| Sbjct 714898 CATCTTCATCACCAACCCAGCAACTCTCGTGTCCTGGAAATTATCGTTGAAGCCGTTGCT 714957 Query 102140 ATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAG 102199 || |||||||||||| | |||| | | | || || | | || ||||| ||| Sbjct 714958 ATCGAACAAGAATTTTTGACAGATGCTTTACCGGTGGCTCTGATTGGTATGAATGCCAAA 715017 Query 102200 TTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA 102259 ||||| |||| ||||||||||||||||| ||| | | |||| | || | ||| Sbjct 715018 CTGATGTGCCAATACATTGAATTTGTGGCCGATCGCTTGCTAGTTGCTCTTGGTCAAGAC 715077 Query 102260 AAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAG 102319 || || || | | || || || || |||||| || || || | || Sbjct 715078 AAACATTACCTTTCCTCTAATCCTTTTGACTTTATGGACCTGATCTCTCTTCAAGGCAAA 715137 Query 102320 ACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGC 102360 |||||||||||||||||| | || | || ||||||||||| Sbjct 715138 ACCAACTTTTTTGAAAAGCGTGTGTCTGACTATCAACGTGC 715178 >seq89 Length=1828303 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| | | ||||||||| |||||| |||||||| | ||| | | || | Sbjct 885418 ATTTGGGATGGTAATGGGTCAAGGGAATACCTGGACAGTCGTGGGCTTGAGCATCGTCGC 885359 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | || |||||||| || || |||||||| |||||||| |||||||| || || ||| | Sbjct 885358 CAAGGCGATTTGGGGCCTGTCTACGGATTTCAATGGCGACATTTTGGGGCAGACTATATT 885299 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT 35493 |||| | ||||||||||||| ||||| | ||||| || Sbjct 885298 GACTGTGATACCGATTATACTGGCCAGGGTGTCGATCAGTT 885258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582808169770