Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1 138 8e-28 seq4 105 5e-18 >seq1 Length=3895514 Score = 138 bits (152), Expect = 8e-28 Identities = 290/430 (67%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| |||||||||| ||||| ||||| || | || ||||| | ||||| |||| Sbjct 3274595 ACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCCAT 3274654 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||||||| | ||||| || ||| | || ||||| || ||||| | Sbjct 3274655 CTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATCTG 3274714 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAA 22919 |||||||||||||| ||| ||||||||||||| | ||||| | || || | | Sbjct 3274715 TCGTGACGAAGGTCTTCACACTGACTTTGCTTGTTTATTGTTTGGTCATATTCATCATCA 3274774 Query 22920 ACCGTGTCAG-GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTT 22978 ||| | ||| || || | | ||||||| || || |||| |||||| | | Sbjct 3274775 ACC-TAGCAGTGATCGTGTGCGTGAAATCATTGTGGAAGCTGTTGCCATTGAACAAGAAT 3274833 Query 22979 TCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGT 23038 | || || || || | || |||||||||| | |||| | | | Sbjct 3274834 TTTTGACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAACTCCAAGCTTATGTGCCAAT 3274893 Query 23039 ACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACG 23098 |||| | ||||| || ||||| || | | ||| || ||| | | ||| || ||| Sbjct 3274894 ACATTGAATTTGTCGCCGATCGTCTCTTGGTTGCTCTTGGTCAAGATAAGCATTACAACT 3274953 Query 23099 TTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTG 23158 | ||||| ||||| |||||||||| || | || |||| ||||| |||||||||| Sbjct 3274954 CCACTAATCCCTTTGACTTCATGGATATGATCTCCCTTCAAGGCAAAACCAACTTCTTTG 3275013 Query 23159 AACGCCGTGT 23168 || ||||| Sbjct 3275014 AAAAACGTGT 3275023 >seq4 Length=1266665 Score = 105 bits (116), Expect = 5e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | || || || ||||| |||||| || | ||||| || | ||||| | || Sbjct 714732 ACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTTGCCTCTAT 714791 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||||||| | ||||| |||||| | || ||||| || |||| || Sbjct 714792 CTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAACTGATCAG 714851 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 |||||||||||||| || ||||||||| || Sbjct 714852 TCGTGACGAAGGTCTCCATACTGACTTTGCATG 714884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233191889882