Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq1 89.7 5e-13 >seq4 Length=1266665 Score = 116 bits (128), Expect = 4e-21 Identities = 231/328 (70%), Gaps = 18/328 (5%) Strand=Plus/Minus Query 14076 ttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG-- 14133 |||||||| || | | | | |||||||| |||| |||||||| |||||| || ||| Sbjct 714563 TTTTTTTTTATGACTTAC-TGGTTTCAATGGCATCAAATAAATTTTCCTTTTCAATAGGG 714505 Query 14134 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14193 | ||||| || | || ||||| || | ||| || |||| | || |||||||| || Sbjct 714504 TCCTTGATAT--AGGTGTCAATCAGGAGGCTGTAGGTTTCTGCATGGATGTTTTCGATCA 714447 Query 14194 CTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGTACTTC--CGAGTAAAAT 14249 ||| ||||| |||||||||||| | ||||| ||| | ||| ||||| | | |||| | Sbjct 714446 TTATTTGAAATCCATAAAAGCATTTGGCTTCGGCGATC-TTG-ACTTCGTCCA-TAAAGT 714390 Query 14250 CTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC-TGCAAAAAATGCCAATATGTT 14308 ||| |||| |||||||| || |||||||| ||| |||||| || ||||||| | Sbjct 714389 -TTTGCACCAAGTTTTCATTGACAATACCATC-TGAGCTTGCAAAGAAAGCCAATACATG 714332 Query 14309 TTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGA 14365 ||||||||| || || ||| | | |||| ||||||| || || || Sbjct 714331 AGAAATAAAGTACCGTTCATCGTCAGTCATTTTGTTTTCCCAATCGATGTTGTCTTTCGA 714272 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAA 14393 ||||| | || ||| ||||||| ||| Sbjct 714271 GAGATCGATCTCTTCAGCTGTCCAGAAA 714244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 298/460 (65%), Gaps = 12/460 (3%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | |||||||| ||||| ||||| |||| || || || || Sbjct 715173 TTGATAGTCAGACACACGCTTTTCAAAAAAGTTGGTTTTGCCTTGAAGAGAGATCAGGTC 715114 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||| ||||| || | | ||| || ||| || | | ||| || Sbjct 715113 CATAAAGTCAAAAGGATTAGAGGAAAGGTAATGTTTGTCTTGACCAAGAGCAACTAGCAA 715054 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | ||| || | ||| ||||| ||||| |||| | | ||||||||| || || Sbjct 715053 GCGATCGGCCACAAATTCAATGTATTGGCACATCAGTTTGGCATTCATACCAATCAGAGC 714994 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || || | || || |||||||||| ||| |||| || || || ||||| | Sbjct 714993 CACCGGTAAAGCATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTCAACGATAAT--T 714936 Query 13823 TGTAATAATCTCATTAGAA------GGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876 | | | || ||| || | | | ||||| ||| | | || || Sbjct 714935 TCCAGGA----CACGAGAGTTGCTGGGTTGGTGATGAAGATGACCAAACAAAAGGCATGC 714880 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| ||| ||| || || || || | ||| || ||||| || || ||||| || || || Sbjct 714879 AAAGTCAGTATGGAGACCTTCGTCACGACTGATCAGTTCATTGGAGAATGTCAACCCAGG 714820 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 |||||| || ||||| || | ||| || || | ||||| | ||||||||||| || || Sbjct 714819 CATCAAACCACGTTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGGAAAAGAAGATGCC 714760 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGAT 14036 || || ||||| || || | | ||||| |||| ||| Sbjct 714759 TTCCACAGCAGCGAAAGCAACAAGACGTTCAGCAAATGAT 714720 >seq1 Length=3895514 Score = 89.7 bits (98), Expect = 5e-13 Identities = 214/309 (69%), Gaps = 21/309 (7%) Strand=Plus/Minus Query 14097 GTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAA 14154 |||||||| |||| ||| || | ||| || || || | ||||| || | || |||| Sbjct 3274391 GTTTCAATGGCATCAAACAAGTTTTCTTTTTCAACAGGGTCCTTGATAT--AAGTGTCAA 3274334 Query 14155 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGC 14214 | | ||| ||||| |||||| || || ||||| || || || || |||||||||| Sbjct 3274333 TCAATAAACTATAAGTTTCAGCATGAATATTTTCAATCATGATTTGGAATCCATAAAAGC 3274274 Query 14215 ATCTAGCTTC--CGACCATTGTACTTC--CGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 || | ||||| ||| | ||| ||||| | | |||| | ||| |||| ||||| || Sbjct 3274273 ATTTGGCTTCAGCGATC-TTG-ACTTCATCCA-TAAAGT-TTTGCACCAAGTTTTCGTTG 3274218 Query 14271 ACTATACCATCACTAGCT-GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC 14329 || |||||||| | |||| ||||| || ||||| | | |||||| | | || || Sbjct 3274217 ACAATACCATC-CGAGCTAGCAAAGAAAGCCAACACATGAGAGATAAAGAAACGTTCGTC 3274159 Query 14330 ATTGTTGAGT---TTTTTCCAATCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACT 14384 ||||| | | |||| ||| || || | |||||| || || || | ||| ||| | Sbjct 3274158 GTTGTTCATTTTGTTTTCCCAGTC--ATTAGTATCCTTGGAGAGGTCAATTTCTTCAGCA 3274101 Query 14385 GTCCAAAAA 14393 ||||| ||| Sbjct 3274100 GTCCAGAAA 3274092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727436319600