Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq67 132 5e-26 seq34 132 5e-26 seq22 84.2 2e-11 seq2 84.2 2e-11 >seq67 Length=1953875 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| |||||||| ||||| ||||||||||| Sbjct 1481119 CCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAA 1481178 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| |||| |||||||| ||||||||||| Sbjct 1481179 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGG 1481238 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| ||| Sbjct 1481239 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACT 1481298 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| || || || || ||||||||| Sbjct 1481299 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCATA 1481346 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1481347 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 1481406 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||||||||||||| | |||| |||||||||||| ||||| Sbjct 1481407 AGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGA 1481466 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| ||| Sbjct 1481467 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACT 1481526 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| || || || || ||||||||| Sbjct 1481527 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 1481574 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1415666 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415725 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| | |||| ||||||||||||||| || Sbjct 1415726 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1415785 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||||| || | | || | | ||| | | ||| ||| Sbjct 1415786 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1415845 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1415846 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415893 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1415894 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415953 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||| ||||||||| | |||| ||||||||||||||| || Sbjct 1415954 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1416013 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||||| || | | || | | ||| | | ||| ||| Sbjct 1416014 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1416073 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1416074 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1416121 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 1415435 TGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCT 1415494 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || | ||||| | ||| ||||| || | |||| ||||||||| || ||| Sbjct 1415495 GACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGA 1415554 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| Sbjct 1415555 GGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCC 1415614 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1415615 ACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415665 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1416122 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 1416181 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | ||||||||||||| |||| |||||||| || || ||||| Sbjct 1416182 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1416241 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||||||| | | || | | ||| | || ||| ||| Sbjct 1416242 ATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACT 1416301 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| || | || || ||||| |||||||| Sbjct 1416302 TCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 1416348 >seq34 Length=2241197 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||||| ||| || || || || | ||| ||||| ||||| || |||||||| Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| | ||| || |||||| ||||||||||||||||||||||||| Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| |||||||| | | || | | ||| | || ||| ||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||| || | || || || || ||||||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCATA 1642885 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| ||||||||| ||||| |||||||| || Sbjct 1642884 CCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGAT 1642825 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| || ||||| | ||||| ||||| ||||| || || Sbjct 1642824 AAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGA 1642765 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||||||| || | | || | | || | | ||||||| Sbjct 1642764 ATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACT 1642705 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| | || || || || |||||||| Sbjct 1642704 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCAT 1642658 >seq22 Length=518773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||| || || |||| ||||| | ||| |||||| Sbjct 75891 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGCTTACCA 75832 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | |||| |||||||||||| ||||| || ||||| ||||| |||||||| || Sbjct 75831 GCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTT 75773 >seq2 Length=1684868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 157064 GCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAA 157123 || ||||| || || || | |||||| || | |||||| || ||||| | || | Sbjct 855936 GCAAGATTGCAAACAGCGGCTTCGTCAGGACTGGAATATTCCACAATTTCGGTGCAAAGG 855877 Query 157124 TTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTG 157183 ||||||||||| || ||| || || ||| ||||||||| || ||||||||| Sbjct 855876 TTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTGGATTTGCGGTTACATGCGTCCTTG 855817 Query 157184 TATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGAT 157227 ||||||||| | || |||||||||| | |||| ||| | ||| Sbjct 855816 TATAACATGAATGGATTGCCGGTTTCCGTTTGAGCTTCCAAGAT 855773 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 156176 GTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGAC 156235 || || | ||| ||||||||||| ||||| || |||||| || || | ||||| Sbjct 856818 GTTCGGAGATAATACATGCCGGTCTTGAGTCCCTTCTTCCAGCCATAAAAGTGCATACTT 856759 Query 156236 GCCATTTTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGAT 156294 | || ||| | |||||| |||| |||| | | | ||| || |||||||||||| || Sbjct 856758 GTCAATTT-GCCAAAGTTGGGTACGCCAATAAAGATGTTCAAGCTTTGACTTTGATCAAT 856700 Query 156295 AAATGCTCCCCTGTCTGCTGCCATTTCAATCA 156326 || || || |||||||| ||||| ||||||| Sbjct 856699 GAACGCACCTCTGTCTGCCGCCATATCAATCA 856668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013804258080