Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 109 8e-19 seq3 100 4e-16 seq2 87.8 3e-12 seq89 86.0 9e-12 >seq1 Length=3895514 Score = 109 bits (120), Expect = 8e-19 Identities = 289/438 (66%), Gaps = 29/438 (7%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || ||||| || || || || || || |||||||| || ||| ||||| ||||||| Sbjct 3274599 CTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTC 3274658 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||||||||||| || || | ||||| || |||| | || || || || | ||| Sbjct 3274659 TGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATCTGTCGT 3274718 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTC--CCG 125604 ||||| || || ||| ||||||||| | || ||||| | | || | || || Sbjct 3274719 GACGAAGGTCTTCACACTGACTTTGCTTGTTTATTGTTTGGTCATATTCATCATCAACCT 3274778 Query 125605 AGTGCAGATCCAGCGA-TGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAA 125663 || |||| | | ||||| |||||| || || || || ||| Sbjct 3274779 AGCAGTGATCGTGTGCGTGAAAT---------CATTGTG---GAAGCTGTTGCCATTGAA 3274826 Query 125664 CAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATG 125723 ||||| ||| | || || | || || || | ||||| ||||||| |||||| ||| Sbjct 3274827 CAAGAATTTTTGACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAACTCCAAGCTTATG 3274886 Query 125724 TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT--TGGCCGCAAGA 125781 ||| | ||||| || ||||| || |||||||| || |||| | ||| | |||| Sbjct 3274887 TGCCAATACATTGAATTTGTCGCCGATCGTCTCTTG-----GTTGCTCTTGGTC--AAGA 3274939 Query 125782 T-----TTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAA 125836 | ||||||| ||| ||||||||||| |||||| | || || || | || || Sbjct 3274940 TAAGCATTACAACTCCACTAATCCCTTTGACTTCATGGATATGATCTCCCTTCAAGGCAA 3274999 Query 125837 GACCAACTTTTTCGAGAA 125854 |||||||| || || || Sbjct 3275000 AACCAACTTCTTTGAAAA 3275017 >seq3 Length=1295254 Score = 100 bits (110), Expect = 4e-16 Identities = 139/191 (73%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 70050 TCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGG 70109 ||| |||| |||||| || |||| ||||| || ||||| ||||||||| | |||| | Sbjct 1013894 TCATCGAC-GACAAGGGG---ATCTCGGGCCTGTCTACGGGTTCCAGTGGCGACACTTTG 1013949 Query 70110 GCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGA 70169 | | | || | ||||| || ||||||||| | || || || || |||||||| || | Sbjct 1013950 GTGCTGAATACATTGACTGTGATACAGACTATACTGGCCAAGGCGTAGATCAATTACAAA 1014009 Query 70170 CAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTA--ATGTGCTCATG 70227 | ||||| || ||| | |||| ||||| || ||| || | || | || |||| || Sbjct 1014010 CTATCATCGATACTATTAAGAATAATCCTACCGATCGGCGTATTATCTTATCTGCT--TG 1014067 Query 70228 GAATCCTGCAG 70238 ||||||||||| Sbjct 1014068 GAATCCTGCAG 1014078 >seq2 Length=1684868 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 127105 CGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACA 127164 ||| | ||||| | || || |||||||| | |||||||||||| || || ||||| ||| Sbjct 366258 CGGAAGAAGATCAAACCAGCACGAGGACCACGGAGAGTCTTGTGTGTGGTGGTGGTGACA 366199 Query 127165 ATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGT 127224 ||||| ||||| || ||||| || | ||||| |||||||| || | ||| || Sbjct 366198 ATGTCGCAATAATCGAAGGGAGAGAGAGCTTCCTTGCCAGCAATCAAACCGGAAATATGG 366139 Query 127225 GCAATATCGGCCATCA 127240 || |||||| ||||| Sbjct 366138 GCCATATCGCACATCA 366123 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 127105 CGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACA 127164 ||| | ||||| | || || |||||||| | |||||||||||| || || ||||| ||| Sbjct 797764 CGGAAGAAGATCAAACCAGCACGAGGACCACGGAGAGTCTTGTGTGTGGTGGTGGTGACA 797705 Query 127165 ATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTGT 127224 ||||| ||||| || ||||| || | ||||| |||||||| || | ||| || Sbjct 797704 ATGTCGCAATAATCGAAGGGAGAGAGAGCTTCCTTGCCAGCAATCAAACCGGAAATATGG 797645 Query 127225 GCAATATCGGCCATCA 127240 || |||||| ||||| Sbjct 797644 GCCATATCGCACATCA 797629 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 98036 AATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACA 98094 ||| ||||| ||||||||||| || || | | || |||| |||||||| || |||| Sbjct 856630 AATGTACAAAACTGTCTGGGAAATATCACAGC-GTACTTTGATTGATATGGCGGCAGACA 856688 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCA--ATCTGTACGTTGCCGAGCCCACCTA 98152 |||||| | |||||| || |||||| || | |||| || ||| || |||| || Sbjct 856689 GAGGTGCGTTCATTGATCAAAGTCAAAGCTTGAACATCTTTA--TTGGCGTACCCAACTT 856746 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 | |||| || |||||||| | ||||| ||||| |||||||| |||||||| Sbjct 856747 TGGCAAATTGACAAGTATGCACTTTTATGGCTGGAAGAAGGGACTCAAGACCGGCATGTA 856806 Query 98213 CTATCTGAGAAC 98224 ||||| |||| Sbjct 856807 TTATCTCCGAAC 856818 >seq89 Length=1828303 Score = 86.0 bits (94), Expect = 9e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||| ||||||| || |||||||| || ||| | || | || | | ||| | ||| Sbjct 885355 GGCGATTTGGGGCCTGTCTACGGATTTCAATGGCGACATTTTGGGGCAGACTATATTGAC 885296 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTC 70186 || || || || ||| | || |||||||| ||||| || ||| || | || | ||| || Sbjct 885295 TGTGATACCGATTATACTGGCCAGGGTGTCGATCAGTTACAGGCAGTGATCCATACTATC 885236 Query 70187 AAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 |||||||| || || ||| | |||| | | | | ||||||||||| Sbjct 885235 AAGACCAACCCTACTGATCGTCGGATTATTTTATCTGCGTGGAATCCTGC 885186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058329255440