Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq34 138 8e-28 seq67 120 2e-22 >seq34 Length=2241197 Score = 138 bits (152), Expect = 8e-28 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| |||||||| || || | |||| | |||||| Sbjct 1642866 ACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCTTCT 1642807 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | |||| |||||||| || ||||||||||| ||||| | Sbjct 1642806 AATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCTTGA 1642747 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || || | ||| | |||||| || | |||||||| || Sbjct 1642746 ATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTCTTG 1642687 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 || || ||||| || |||||||||||||| |||| || |||| Sbjct 1642686 CCGGTAAGAGTCTTAACAAAAATTTGCAT-GTTGATAAAAAAA 1642645 >seq67 Length=1953875 Score = 120 bits (132), Expect = 2e-22 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || ||| | | | ||||| Sbjct 1481593 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 1481652 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| || || | || | ||||||||||||| ||||| ||||| ||||| Sbjct 1481653 AACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTGG 1481712 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || |||| ||| ||| || || ||||||||||| || Sbjct 1481713 ATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTG 1481772 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA-AAATAAA 15376 || || || ||||| || ||||||||||| ||||| ||||||| Sbjct 1481773 CCAGTAAGGGTTTTAACGAAAATTTGCATGTTTGAGAAATAAA 1481815 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || ||| | | | ||||| Sbjct 1416140 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCC 1416199 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | || | |||||||||||| ||||| ||||| || || Sbjct 1416200 AATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGG 1416259 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| || ||| | || |||| ||| ||| || || ||||||||||| || Sbjct 1416260 ATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTG 1416319 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || ||||| || || ||||||||||| || Sbjct 1416320 CCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || | | | | | ||||| Sbjct 1480909 ACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTCC 1480968 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||| |||||||||||| || || ||||| ||||| | Sbjct 1480969 AATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTGA 1481028 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || || ||| | || || | || |||| || || | ||||| || || Sbjct 1481029 ATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTTG 1481088 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || ||||| ||||||||| Sbjct 1481089 CCAGTCAGAGTCTTCACAAAGATTTGCATA 1481118 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || ||| | | | |||||| Sbjct 1481365 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCT 1481424 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | ||||||||||| || || ||||| ||||| ||||| | Sbjct 1481425 AATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 1481484 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || || ||| | || || | || |||| || || || ||||| || || Sbjct 1481485 ATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTG 1481544 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| ||||||||| Sbjct 1481545 CCAGTCAAGGTCTTGACAAAGATTTGCATA 1481574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| ||||||||||| ||| | | | ||||| Sbjct 1481137 ACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1481196 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | || | ||||||||| ||| || || ||||| ||||| | Sbjct 1481197 AATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGA 1481256 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || || ||| | || || | || |||| || || || ||||| || || Sbjct 1481257 ATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTG 1481316 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || ||||| ||||||||| Sbjct 1481317 CCAGTCAAGGTCTTCACAAAGATTTGCATA 1481346 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || ||||| ||||||||||| | | | | | ||||| Sbjct 1415456 ACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTCC 1415515 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || ||| | ||||||||||| ||||| ||||| ||||| ||||| | Sbjct 1415516 AATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 1415575 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || || ||| | || || | || ||| || || | ||||| || || Sbjct 1415576 ATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTG 1415635 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| ||||||||| Sbjct 1415636 CCAGTCAAAGTCTTGACAAAGATTTGCATA 1415665 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || ||| | | | ||||| Sbjct 1415684 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 1415743 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||||||||| || ||| ||||| ||||| || || | Sbjct 1415744 AATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGA 1415803 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || | || ||| || || | ||||| || || Sbjct 1415804 ATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTG 1415863 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| ||||||||| Sbjct 1415864 CCAGTCAAAGTCTTGACAAAGATTTGCATA 1415893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || ||||| |||||||| || ||| | | | ||||| Sbjct 1415912 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 1415971 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || ||||| | ||||||||||| || ||| ||||| ||||| || || | Sbjct 1415972 AATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGA 1416031 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || | || ||| || || | ||||| || || Sbjct 1416032 ATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTG 1416091 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| ||||||||| Sbjct 1416092 CCAGTCAAAGTCTTGACAAAGATTTGCATA 1416121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178785078454