Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq34 114 8e-21 seq67 104 1e-17 >seq34 Length=2241197 Score = 114 bits (126), Expect = 8e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33137 TCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAA 33196 || ||||| |||| || || || ||||| || ||||| || || ||||| ||||||||| Sbjct 1643118 TCGTCACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAA 1643059 Query 33197 TCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 ||||| || | | || ||||||||||| ||| ||| || | ||||||||| || Sbjct 1643058 TCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCG 1642999 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGT 33316 | || || ||||| || || |||| ||||| || | | || | ||| || | Sbjct 1642998 GGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGAT 1642939 Query 33317 TGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || |||| ||| || ||||| || ||||| || || || || |||||||| Sbjct 1642938 TCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 >seq67 Length=1953875 Score = 104 bits (114), Expect = 1e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | ||||| || ||||| || ||||| || |||||| || | || || Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTC 1480967 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| ||| ||| || || ||||| ||||| | || || ||||| || || Sbjct 1480968 CAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTG 1481027 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||||| || | | ||| | ||| | || || |||||||| || || || Sbjct 1481028 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTT 1481087 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || |||||||| Sbjct 1481088 GCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||| | ||||| || ||||| || |||||||| |||||| | | || || Sbjct 1415455 CACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTC 1415514 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| || || || |||||||||||||| | || || ||||| || || Sbjct 1415515 CAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTG 1415574 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||||| || | | || | ||| | || || |||||||| || || || Sbjct 1415575 AATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415634 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || || || |||||||| Sbjct 1415635 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || || || ||||| || ||||| ||||| | | | | || || Sbjct 1416139 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1416198 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 |||||| || ||| ||| || | |||||| ||||| | || || ||||| || || Sbjct 1416199 CAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 1416258 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 || ||||| || | | ||| | |||| || || || |||| || || || || Sbjct 1416259 GATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1416318 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || |||||||| || ||||||||||||||||| Sbjct 1416319 GCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || || || ||||| || ||||| ||||| | | || | || || Sbjct 1415683 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415742 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || Sbjct 1415743 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1415802 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| || || || | | || | ||| | || || |||||||| || || || Sbjct 1415803 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415862 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || || || |||||||| Sbjct 1415863 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || || || ||||| || ||||| ||||| | | || | || || Sbjct 1415911 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415970 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| ||| ||| || ||||||||||| || | ||| || ||||| || || Sbjct 1415971 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1416030 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| || || || | | || | ||| | || || |||||||| || || || Sbjct 1416031 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1416090 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || || || |||||||| Sbjct 1416091 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777234800412