Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq34 118 8e-22 seq67 109 4e-19 >seq34 Length=2241197 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| ||||| |||| || || ||||||||||| ||||| ||| |||| |||| Sbjct 1643098 TAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATC 1643039 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||| || || ||||| |||| |||||||| || |||| | |||||| || || Sbjct 1643038 TTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTC 1642979 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||| ||||||||||| | | | || || | | ||||| || | ||||| || Sbjct 1642978 TTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGT 1642919 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || | ||||| ||||| |||||||| Sbjct 1642918 TTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 >seq67 Length=1953875 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || || ||||| || || ||||| || ||| |||| || Sbjct 1415455 CACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTC 1415514 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 |||||| || || || || ||||| ||||||||||| |||| | |||||| || ||| Sbjct 1415515 CAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTG 1415574 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| |||||||| || | | | || || | | ||||| || | ||||| || || Sbjct 1415575 AATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415634 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| |||||||| Sbjct 1415635 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGT 43970 ||||||||| || || || |||||||| || || || | || || || |||| | Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGC-CATCTT 1480966 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||||||| || || ||||| ||||| ||||| ||||| |||| | |||||| || ||| Sbjct 1480967 CCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTT 1481026 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| |||||||| || | ||| | || | ||||| || | ||||| || | Sbjct 1481027 GAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCT 1481086 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || | |||||||||||| |||||||| Sbjct 1481087 TGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || || |||||||| || || || | ||| |||| || Sbjct 1416139 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1416198 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||| || ||||| || | ||||| ||||| |||| | |||||| |||||| Sbjct 1416199 CAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 1416258 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||||||||||| | ||| | || | | ||||| || | ||||| || || Sbjct 1416259 GATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1416318 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATGTCGA 44126 || || | |||||| || || |||||||||| || Sbjct 1416319 GCCAGTAAGAGTCTTGACGAAAATTTGCATGTTGA 1416353 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || || || ||||| || || ||||| | | || || |||| | Sbjct 1481136 CACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGC-CATCTT 1481194 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||||||| || || ||||| || | ||||| || || |||| | |||||| || ||| Sbjct 1481195 CCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTT 1481254 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| |||||||| || | ||| | || | ||||| || | ||||| || | Sbjct 1481255 GAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCT 1481314 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || ||||||||||| |||||||| Sbjct 1481315 TGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777193557912