Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34 161 2e-34 seq67 136 9e-27 seq1 125 2e-23 seq5 87.8 4e-12 >seq34 Length=2241197 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | ||||||||| || ||||| || ||||| |||| |||||| || || Sbjct 1642870 AAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATC 1642811 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||| ||| |||||||| ||||| || | ||||||||||| || |||||||| || || Sbjct 1642810 TTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTC 1642751 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| ||| || ||||| || | | ||| || |||||| || || ||||| || Sbjct 1642750 TTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGT 1642691 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || ||||| || || ||||| || ||||| ||| Sbjct 1642690 CTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTTG 1642654 >seq67 Length=1953875 Score = 136 bits (150), Expect = 9e-27 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || |||||||| ||||| | || ||||||| |||||| ||| Sbjct 1481377 GTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAATTGTTTACCA 1481436 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||||||||| || ||||| || || ||||||||| ||| Sbjct 1481437 GCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTC 1481496 Query 104483 ACATTTTC--TACGGT-ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || || || | ||| ||| || || | |||||||||||| ||||| | Sbjct 1481497 ACATTGTCGATAGAGTCAGAGCT---TTCCACTTCCAATGTAATAGTCTTGCCAGTCAAG 1481553 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 1481554 GTCTTGACAAAGATTTGCAT 1481573 Score = 118 bits (130), Expect = 2e-21 Identities = 147/200 (74%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || ||||| ||||| | || ||||| | ||| || ||| Sbjct 1481149 GTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGCTTACCA 1481208 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||| ||||| || ||||| || || ||||||||| ||| Sbjct 1481209 GCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTC 1481268 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||| || | | || ||| ||| || || | |||||||||||| ||||| | Sbjct 1481269 ACATTGTCAATTGAGTCAGAGCT---TTCCACTTCCAATGTAATAGTCTTGCCAGTCAAG 1481325 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| Sbjct 1481326 GTCTTCACAAAGATTTGCAT 1481345 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| ||||| | || ||||| | ||| || ||| Sbjct 1415696 GTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAATTGCTTACCA 1415755 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||| || || || ||||| ||||| ||||||||| || Sbjct 1415756 GCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGAATCTTTTGCTTC 1415815 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | || | ||| || || || ||||||||||| ||||| | || Sbjct 1415816 ACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTC 1415875 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1415876 TTGACAAAGATTTGCAT 1415892 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| ||||| | || ||||| | ||| || ||| Sbjct 1415924 GTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAATTGCTTACCA 1415983 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||| || || || ||||| ||||| ||||||||| || Sbjct 1415984 GCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGAATCTTTTGCTTC 1416043 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | || | ||| || || || ||||||||||| ||||| | || Sbjct 1416044 ACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTC 1416103 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1416104 TTGACAAAGATTTGCAT 1416120 Score = 114 bits (126), Expect = 3e-20 Identities = 195/276 (71%), Gaps = 14/276 (5%) Strand=Plus/Plus Query 104289 ATAATCATAACTATTATACTGAGTCTTTCCATACTTTATTTATT--CCCCCTCTTAGCCT 104346 ||||| |||| ||| |||| || |||||| ||| | |||| || || | || | Sbjct 1480851 ATAATAATAA-TATAATAC---GTATTTCCA-ACTAG-TCTATTGGCCACCACGAAGACG 1480904 Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || ||||| || ||||| || ||||| || | ||| | || || Sbjct 1480905 AAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATC 1480964 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | ||| || |||||||| || | | ||||| || ||||| || ||||| || || Sbjct 1480965 TTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTC 1481024 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAAT 104523 ||||||||| ||| ||||| || | | || ||| ||| || || || ||||| Sbjct 1481025 TTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCCACTTCCAGAGTAAT 1481081 Query 104524 AGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| ||||| || || || ||||| || ||||| Sbjct 1481082 AGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 104322 CTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATAT 104381 ||||||| ||| || | || | ||| || | ||| | || ||||| || || || | Sbjct 1415429 CTTTATTG--TCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGT 1415486 Query 104382 TATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTT 104441 | || || || | ||| | || ||||| | ||| || || || ||||| | | || | Sbjct 1415487 TGTAATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCT 1415546 Query 104442 GATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGC 104501 | |||||||| || ||||| || || ||||||||| ||| ||||| || | | || Sbjct 1415547 GGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAG 1415606 Query 104502 TAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || || || ||||||||||| ||||| | || || ||||| || ||||| Sbjct 1415607 ATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 >seq1 Length=3895514 Score = 125 bits (138), Expect = 2e-23 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| ||||| |||||||| ||||| || || | |||||| | ||||| ||| Sbjct 3274602 GTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTCTGG 3274661 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | |||||| | || | ||||| || || || ||||| || |||||||| | | ||| Sbjct 3274662 CTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATCTGTCGTGAC 3274721 Query 269258 GAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCT 269317 |||||| | ||| ||||| ||||||||||| ||| | || || | || ||||| Sbjct 3274722 GAAGGTCTTCACACTGACTTTGCTTGTTTATTGTTTGGTCATATTCAT---CATCAACCT 3274778 Query 269318 TCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTA 269377 ||| | || ||||| || | ||||||| | | ||| ||||||| | Sbjct 3274779 AGCAGTGATCGTGTGCGTGAAATCATTGTGGAAGCTGTTGCCATTGAACAAGAATTTTTG 3274838 Query 269378 ACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412 ||||| ||||| || | | |||||| |||||||| Sbjct 3274839 ACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAA 3274873 Score = 96.9 bits (106), Expect = 8e-15 Identities = 192/277 (69%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACT-T 268803 |||||| || || |||||||| ||||||| |||||| | || || || | || | Sbjct 3274072 TACAAAAAGCACGAAGCTTCTTTCTGGACTGCTGAAGAAATTGACCTCTCCAAGGATACT 3274131 Query 268804 AATAGATTGGAAAAATTTAA--AACCA-GAAGAAAGAAGATTTATATCTTATATTCTTGC 268860 ||| || ||| |||| || ||| | || ||| | ||||| ||| || | | || Sbjct 3274132 AAT-GACTGGGAAAACAAAATGAACAACGACGAACGTTTCTTTATCTCTCATGTGTTGGC 3274190 Query 268861 GTTTTTTGC-AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG 268919 || ||||| || | | |||||||| || |||||||| | || | || || | | Sbjct 3274191 TTTCTTTGCTAGCTCG-GATGGTATTGTCAACGAAAACTTGGTGCAAAACTTTATGGATG 3274249 Query 268920 AGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTC 268979 | || |||| ||||||||| ||| ||||| |||||||| || || |||||||||| Sbjct 3274250 AAGTCAAGATCGCTGAAGCCAAATGCTTTTATGGATTCCAAATCATGATTGAAAATATTC 3274309 Query 268980 ATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || | || | || ||| |||| || || |||||||| Sbjct 3274310 ATGCTGAAACTTATAGTTTATTGATTGACACTTATAT 3274346 >seq5 Length=1173598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| ||||| | || ||||| | ||| || ||| Sbjct 909351 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTGCTTACCA 909292 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | || ||||||||||| || ||||| || || ||||||||| || Sbjct 909291 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGCTTG 909232 Query 104483 ACATTTTC 104490 ||||| || Sbjct 909231 ACATTGTC 909224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397013284552