Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq67 116 3e-21 seq34 107 2e-18 seq22 87.8 2e-12 >seq67 Length=1953875 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || | |||| | ||| || Sbjct 1481592 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481651 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| ||| ||||||| | | ||| || || |||||||||||||| ||||| | Sbjct 1481652 CAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTG 1481711 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||| || ||| | ||| | | || || || | || ||||| || Sbjct 1481712 GATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1481771 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||||||| ||||| || || || |||||| || Sbjct 1481772 GCCAGTAAGGGTTTTAACGAAAATTTGCATGTTT 1481805 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || | |||| | ||| || Sbjct 1481364 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1481423 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | ||||| || |||| || || | ||||||||| |||||||||||||| ||||| | Sbjct 1481424 TAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTG 1481483 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| || || | ||| || ||||| | || || || | || || || || Sbjct 1481484 AATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481543 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || |||||||| ||||| Sbjct 1481544 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || | |||| | ||| || Sbjct 1415683 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415742 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || |||| || || | ||||||||| || ||||||||||| || || | Sbjct 1415743 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1415802 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||| || | ||| || ||||| || || || | || || || || Sbjct 1415803 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415862 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 1415863 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || | |||| | ||| || Sbjct 1415911 CACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 1415970 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || |||| || || | ||||||||| || ||||||||||| || || | Sbjct 1415971 CAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTG 1416030 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| ||| || | ||| || ||||| || || || | || || || || Sbjct 1416031 AATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1416090 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 1416091 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||||||||||||| | ||| || || | ||| | ||| || Sbjct 1416139 CACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTC 1416198 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||||| || ||||||| | | ||| || ||||||||||||||||| || || | Sbjct 1416199 CAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 1416258 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||||| | | | | ||| | | || || || | || ||||| || Sbjct 1416259 GATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTT 1416318 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||||||||| || || || || |||||| Sbjct 1416319 GCCAGTAAGAGTCTTGACGAAAATTTGCATG 1416349 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||| ||||||||||| | ||| ||||| || ||| | ||| || Sbjct 1415455 CACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTC 1415514 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| | || || || | |||||| || |||||||||||||| ||||| | Sbjct 1415515 CAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTG 1415574 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| || || | ||| || ||||| || || || | || || || || Sbjct 1415575 AATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTT 1415634 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||| ||||| Sbjct 1415635 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | || ||||||||||| | ||| || || || |||| | ||| || Sbjct 1480908 CACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTC 1480967 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| |||| ||| || || ||||| |||||||| ||||| | Sbjct 1480968 CAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTG 1481027 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| || || | | | | ||||| | || || || | || || || || Sbjct 1481028 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTT 1481087 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||||||||| ||||| Sbjct 1481088 GCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||||||||||||| | ||| ||||| | |||| | ||| || Sbjct 1481136 CACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 1481195 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| | | ||| ||||| ||||| |||||||| ||||| | Sbjct 1481196 CAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTG 1481255 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| ||| || || | | | | ||||| | || || || | || || || || Sbjct 1481256 AATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTT 1481315 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || ||||||||||| ||||| Sbjct 1481316 GCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 >seq34 Length=2241197 Score = 107 bits (118), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG-- 94850 || || |||||||| || || ||||||||||| | || |||| | ||| || | Sbjct 1643100 CGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAAT--CAGATAAGGTACGCC 1643043 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||| |||| || || || ||||||| | | ||||||||| ||||| |||||||| | Sbjct 1643042 CATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCT 1642983 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| ||| |||||| | ||| || ||||| | || || || | || | Sbjct 1642982 TGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAA 1642923 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || ||||| || || |||||||| ||||| Sbjct 1642922 TAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | |||||||||||||| | ||| || || | ||| | ||| || Sbjct 1642867 CACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCTTC 1642808 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | || ||||| | || || | || ||| ||||| || ||||| ||||| ||||| | Sbjct 1642807 TAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCTTG 1642748 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||| |||||| ||| | |||| || || || | || ||||| || Sbjct 1642747 AATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTCTT 1642688 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || |||||||| || ||||| || |||||| Sbjct 1642687 GCCGGTAAGAGTCTTAACAAAAATTTGCATG 1642657 >seq22 Length=518773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || ||||||||||| | ||| || || || |||| ||| ||| Sbjct 75903 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCC 75844 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || |||| || || | ||||||||| |||||||||||||| ||||| | Sbjct 75843 AATTGCTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGG 75784 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 |||||| |||||| | ||| || ||||| Sbjct 75783 ATTTTTTGCTTGACATTGTCGATAGAGTCAG 75753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290673257840