Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq89 199 6e-47 seq67 190 3e-44 seq5 187 4e-43 >seq89 Length=1828303 Score = 199 bits (220), Expect = 6e-47 Identities = 204/264 (77%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 16437 AGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||||| | ||| | | || |||||||| ||||| || |||||||| ||||| ||| Sbjct 58625 AGCGTCATCGTAAGATTT-TACGTGATAACATTCAAGGTATTACCAAGCCTGCTATTCGT 58683 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| |||||||||||||| ||||||||| ||||||| | |||| ||||| | ||| Sbjct 58684 CGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAAGAAACCCGT 58743 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| | ||| ||||| | | | ||| |||| ||||||| || ||| || || || Sbjct 58744 GGTGTCCTCAAGGTCTTCTTGGAAAACGTCATCCGTGATGCTGTCACCTACACTGAACAT 58803 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || || | |||||||| ||||| ||||| | |||||||| ||||| |||||||| ||| Sbjct 58804 GCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTTTGAAGCGTCAAGGTCGT 58863 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||| || ||||| Sbjct 58864 ACCCTCTATGGTTTCGGCGGTTAA 58887 >seq67 Length=1953875 Score = 190 bits (210), Expect = 3e-44 Identities = 198/257 (77%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 16437 AGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||||| | ||| |||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 308157 AGCGTCATCGTAAGAT-TCTTCGTGACAACATTCAAGGTATTACTAAGCCTGCTATTCGT 308215 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| |||||||||||||| ||||||||| |||| || | |||| ||||| | ||| Sbjct 308216 CGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAAGAAACCCGT 308275 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| | ||| ||||| | | | ||| |||| ||||||| || ||| || || || Sbjct 308276 GGTGTCCTCAAGGTCTTCTTGGAAAACGTCATCCGTGATGCTGTCACCTACACTGAACAT 308335 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || || | |||||||||||||| ||||| | |||||||| ||||| |||||||| ||| Sbjct 308336 GCCAAGAGAAAGACTGTCACCTCTTTGGATGTTGTCTATGCTTTGAAGCGTCAAGGTCGT 308395 Query 16676 AAGATTTATGGTTTTGG 16692 | | || ||||| || Sbjct 308396 ACCCTCTACGGTTTCGG 308412 >seq5 Length=1173598 Score = 187 bits (206), Expect = 4e-43 Identities = 197/257 (77%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 16437 AGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||||| | ||| |||||| || ||||| ||||| || || ||||| ||||| ||| Sbjct 891832 AGCGTCATCGTAAGAT-TCTTCGTGACAACATTCAAGGTATAACTAAGCCTGCTATTCGT 891774 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| |||||||||||||| ||||||||| ||||||| | |||||||||| | ||| Sbjct 891773 CGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAACCCGT 891714 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| | ||| ||||| | | | || |||| ||||||| | ||| || || || Sbjct 891713 GGTGTCCTCAAGGTCTTCTTAGAAAATGTCATCCGTGATGCTGTTACCTACACTGAACAT 891654 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || || | ||||||||||||||| ||||| | || ||||| |||| |||||||| ||| Sbjct 891653 GCAAAGAGAAAGACTGTCACCTCCTTGGATGTTGTATATGCTCTGAAGCGTCAAGGTCGT 891594 Query 16676 AAGATTTATGGTTTTGG 16692 | | || ||||| || Sbjct 891593 ACCCTCTACGGTTTCGG 891577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075114055142