Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5 192 9e-44 seq18 179 6e-40 seq12 156 7e-33 >seq5 Length=1173598 Score = 192 bits (212), Expect = 9e-44 Identities = 365/532 (69%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 ||||| |||| ||||| || | ||||||||| || || || || |||||||| ||| Sbjct 870363 AACCTACTGAAATCTACAACTTGGGTGCTCAATCACACGTCAAGGTGTCCTTTGATATGT 870304 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 | || || ||| | |||| |||||| | || || | | || | || || | || | Sbjct 870303 CTGAATACACTGGTGATGTGGATGCTCTTGGTACCTTGCGTTTATTGGATGCTATCCGCA 870244 Query 193759 TGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTG 193818 | ||| || || ||| ||| ||||||| || || ||| ||| | |||||| Sbjct 870243 CCTGTGGATTGACTGAACGTGTGCGCTTCTATCAAGCCTCCACCTCTGAATTATATGGTA 870184 Query 193819 GTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTG 193878 ||| | | ||||| | | |||||||| || || | || |||||||||||||||| Sbjct 870183 AGGTTGTCGAAACTCCTCAAAAGGAAACCACTCCCTTCTACCCTCGCTCTCCTTATGGTG 870124 Query 193879 TAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACG 193938 | || ||| | || ||||| |||||| | || |||||||| || || | | | Sbjct 870123 TGGCCAAGCTCTACGGTTACTGGATCGTGGTCAACTATCGTGAATCCTACAACATGTATG 870064 Query 193939 CTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTC 193998 || || ||||| |||||||||||||||||||| | | ||| || || ||||| | Sbjct 870063 CTTGTAACGGTATCCTCTTCAATCACGAATCTCCTCGTCGTGGTCGCACCTTCGTAACCC 870004 Query 193999 GTAAGATTACACAAGG-TTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTT-TATCT 194056 ||||||| | ||||| | | || | ||| | | || || | || ||| || | Sbjct 870003 GTAAGATCTC-CAAGGCTGTGGCTGATATCCATTTGGGCCGTCA-AGAATGCTTGTACTT 869946 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 ||||| || |||| ||| | || ||||| || || ||| ||||| |||| ||||| Sbjct 869945 GGGTAACATTGATGCAAAGCGTGACTGGGGTCATGCTCGGGACTATGTCGAAGGTATGTG 869886 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 ||| ||||||||||| || |||| || || | |||| | ||||| |||||| Sbjct 869885 GTTGATGTTGCAACAAGACCAACCTGAAGACTTTGTGTTGGCTACTGGTGAA 869834 >seq18 Length=557977 Score = 179 bits (198), Expect = 6e-40 Identities = 402/596 (67%), Gaps = 16/596 (3%) Strand=Plus/Minus Query 193581 CTTCATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGC---AGTT 193637 |||||| |||| ||| | ||||| || || |||| ||| ||||| | ||| Sbjct 112458 CTTCATCATGGTGATTTGACTGA--CTCTACCTGTT-TGGTCCACATTATCTCCCAAGTG 112402 Query 193638 GAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATG 193697 ||||| |||| | || ||||||| ||| ||| ||| || || || |||||||| ||| Sbjct 112401 CAACCTACTGAAGTGTACAATCTTGCTGCCCAATCTCACGTCAAGGTGTCCTTTGATATG 112342 Query 193698 CCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGT 193757 | || || ||| | |||| |||||| | || ||||| | || | || || | ||| Sbjct 112341 TCTGAATACACTGGTGATGTGGATGCTCTCGGTACTCTCCGTTTATTAGATGCTATCCGT 112282 Query 193758 ATGTTGGGAATGGAGAAAGAT---GTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 | | ||| || | ||| || || |||| || || || ||| ||| |||| Sbjct 112281 ACCTGTGGATTG---ACTGATCGCGTCCGTTTCTACCAAGCCTCCACCTCGGAATTGTAC 112225 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 ||| || | | || || | | |||||||| || || |||| || || || ||| Sbjct 112224 GGTAAGGTCGTTGAAACCCCTCAAAAGGAAACCACGCCCTTCTATCCCCGTTCCCCCTAT 112165 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 ||||| || ||| | |||||||| ||||| | ||||||||||| || || | Sbjct 112164 GGTGTGGCTAAGCTCTATGGTTACTGGATTGTGGTCAATTATCGTGAATCCTACAACATG 112105 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 | || || |||||||||||||| ||||||||||| | |||| || ||||| Sbjct 112104 TATGCCTGTAACGGTATTCTCTTCAACCACGAATCTCCCCGCCGAGGCCGTACCTTTGTG 112045 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGG--ATTACAGAAGATTCTTT 194052 || || ||||| | | | | | | | ||| | |||| | |||| ||| | Sbjct 112044 ACCCGCAAGATCTCCCGTGCTGTCGCCGATATC-CACTTGGGCCGTCAAGAA-TGTCTGT 111987 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 | || ||||| || |||| ||| | |||||||| || || |||||||| ||||||| | Sbjct 111986 ACCTCGGTAACATTGATGCAAAGCGTGATTGGGGTCATGCCAAGGATTACGTTGAAGGTA 111927 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 ||||||| ||| ||||||| || |||| ||||| | ||| | ||||| |||||| Sbjct 111926 TGTGGTTGATGCTGCAACAAGACCAACCTGATGACTTTGTATTGGCTACTGGTGAA 111871 >seq12 Length=2511101 Score = 156 bits (172), Expect = 7e-33 Identities = 397/596 (67%), Gaps = 16/596 (3%) Strand=Plus/Plus Query 193581 CTTCATTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGC---AGTT 193637 |||||| |||| ||| | |||||| || | |||| ||| | ||| | | ||| Sbjct 922543 CTTCATCATGGTGATTTGACTGATTCT--ACTTGTT-TGGTTCACATCATCTCCCAAGTG 922599 Query 193638 GAACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATG 193697 ||||| |||| | || ||||||| ||| ||| || || || || || ||||| ||| Sbjct 922600 CAACCTACTGAAGTATACAATCTTGCTGCCCAATCCCACGTCAAGGTGTCGTTTGATATG 922659 Query 193698 CCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGT 193757 | || || ||| | |||| |||||| | || || || | || | || || | ||| Sbjct 922660 TCTGAATACACTGGTGATGTCGATGCTCTTGGTACCCTCCGTTTATTAGATGCCATCCGT 922719 Query 193758 ATGTTGGGAATGGAGAAAGAT---GTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 | | ||| || | ||| ||||| ||||||| || |||||| ||| |||| Sbjct 922720 ACCTGTGGATTG---ACTGATCGGGTTCGTTTCTATCAAGCCTCTACCTCGGAATTGTAC 922776 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 ||| ||| | | || || | | |||||||| || || | || || || || ||| Sbjct 922777 GGTAAGGTTGTTGAAACCCCTCAAAAGGAAACCACTCCCTTCTACCCCCGTTCCCCCTAT 922836 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 || || || ||| | || || || ||||| | || || ||||| || || | Sbjct 922837 GGCGTGGCCAAGCTCTACGGCTACTGGATTGTGGTCAACTACCGTGAATCTTACAACATG 922896 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 |||| || |||||| |||||||| |||||||| || | |||| || || || Sbjct 922897 TACGCCTGTAATGGTATCCTCTTCAACCACGAATCACCTCGTCGAGGACGTACCTTCGTG 922956 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGAT--TACAGAAGATTCTTT 194052 ||||| ||||| | | | | | | ||| | |||| | | |||| | || | Sbjct 922957 ACTCGCAAGATCTCCCGTGCCGTTGCCGATATCCAT-TTGGGTCGTCAAGAATGT-CTGT 923014 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 || | |||||| || |||| ||| | |||||||| || || ||||| ||||| |||| | Sbjct 923015 ATTTGGGTAATATTGATGCGAAGCGTGATTGGGGTCATGCCAAGGACTATGTGGAAGGTA 923074 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAA 194168 ||||||| ||||||||||| |||||||| || || | ||| | || || || ||| Sbjct 923075 TGTGGTTGATGTTGCAACAAGATGAACCTGAAGACTTTGTATTGGCCACTGGCGAA 923130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554251122640