Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq4 111 2e-19 seq34 109 5e-19 seq67 104 2e-17 >seq1 Length=3895514 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 119655 ACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAA 119714 |||||||||||||| || || || ||||| | ||| || || ||| ||| || || || Sbjct 3275023 ACACGTTTTTCAAAGAAGTTGGTTTTGCCTTGAAGGGAGATCATATCCATGAAGTCAAAG 3274964 Query 119715 GGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACA 119774 ||||| | | |||| ||||||| || | || | | | ||| || ||||| || ||| Sbjct 3274963 GGATTAGTGGAGTTGTAATGCTTATCTTGACCAAGAGCAACCAAGAGACGATCGGCGACA 3274904 Query 119775 AACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGC 119833 || || ||||||| |||||| | ||| || ||||| || | | ||| || || | ||| Sbjct 3274903 AATTCAATGTATTGGCACATAAGCTTG-GAGTTCATACCAATAAGAGCAACAGGGAGAGC 3274845 Query 119834 ATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAA 119874 || || || || || | ||||||| | || ||||| |||| Sbjct 3274844 ATCCGTCAAAAATTCTTGTTCAATGGCAACAGCTTCCACAA 3274804 >seq4 Length=1266665 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 119654 CACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAA 119713 |||||| ||||||||||| || || ||||| | |||||| || | |||||| || || Sbjct 715161 CACACGCTTTTCAAAAAAGTTGGTTTTGCCTTGAAGAGAGATCAGGTCCATAAAGTCAAA 715102 Query 119714 AGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA-CAGTCGATCTGCCA 119772 |||||| | | | |||| ||||| | | |||| ||| | || ||||| |||| Sbjct 715101 AGGATTAGAGGAAAGGTAATGTTTGTCTT-GACCAAGAGCAACTAGCAAGCGATCGGCCA 715043 Query 119773 CAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAG 119832 |||| || ||||||| |||||| || | |||||| || | || ||| |||||||||| Sbjct 715042 CAAATTCAATGTATTGGCACATCAGTTTGGCATTCATACCAATCAGAGCCACCGGTAAAG 714983 Query 119833 CATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTAC 119872 ||| || || || || | ||| || | || ||||| || Sbjct 714982 CATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTCAAC 714943 >seq34 Length=2241197 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | ||||| || || | || || || | || || | ||| ||||||| Sbjct 1642654 CAACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATC 1642713 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || | ||||| | ||||| ||||| ||| ||||| ||||| || || || || Sbjct 1642714 TTCTGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGA 1642773 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACT 26943 ||||||| |||| |||| || || || ||| | ||||||| |||| | | | || ||| Sbjct 1642774 TCAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAA-CTTTATCGGACT 1642832 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||||||||| |||||||| | ||| |||| || Sbjct 1642833 ACAACATTCAAAAGGAATCTACACTTCATTTGGTGCT 1642869 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | || || ||| | || || | ||| | ||||| Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | ||||| | ||||||||||||||| ||||| ||||| || ||||||||||| Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | || || ||| | ||||||| | | | | || || || Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| ||||| || Sbjct 1643066 ATTCAAAAGGAATCAAC 1643082 >seq67 Length=1953875 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||| || | || || | ||| | |||||| Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | ||||| | || |||||||||||| ||||| ||||| || ||||| || || Sbjct 1415604 GACTCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 1415545 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACTATA 26946 ||| | | |||| || ||| || ||| | ||||||| | | |||| || || | Sbjct 1415544 CAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCA--GATTACA 1415487 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 |||| ||||| ||||| ||| ||||| |||| || | ||| | || ||| || Sbjct 1415486 ACATCCAAAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGTGGTGGACAA 1415434 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | || || || || | ||||| || | || ||| | ||| | ||||| Sbjct 1416352 CAACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATC 1416293 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||| |||| || | ||||||||||| || || || ||||| || ||||| || Sbjct 1416292 CTCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGA 1416233 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | ||||| | | || |||||| | ||||||| | | | ||||| Sbjct 1416232 CCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTA 1416173 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||| ||||||||| | || |||| || Sbjct 1416172 CAACATTCAAAAGGAATCTACTCTTCACTTGGTGCT 1416137 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||| || | || || | ||| | ||| Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | ||||| | || |||||||||||| ||||| ||||| || ||||| ||||| Sbjct 1481513 GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1481454 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | || |||||| | ||||||| | | || ||||| ||| Sbjct 1481453 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAAC 1481394 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||||||| | || |||| || Sbjct 1481393 ATTCAAAAGGAATCTACTCTTCACTTGGTGCT 1481362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || || ||||| || | || || | ||| | ||| Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | || |||||||||||| ||||| ||||| || |||||||||||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | || || ||| | ||||||| | | | || || ||| Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1481166 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||||||| | ||| |||| || Sbjct 1481165 ATCCAAAAGGAATCTACTCTTCATTTGGTGCT 1481134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661837571680