Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq34 114 1e-20 seq67 104 2e-17 seq4 98.7 9e-16 >seq34 Length=2241197 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | ||||| || || | || || || | ||||| | ||||| || | Sbjct 1642654 CAACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATC 1642713 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || | ||||| | ||||| ||||| ||| ||||| ||||| || || || || Sbjct 1642714 TTCTGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGA 1642773 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATT 24165 |||||| ||||||||| || || |||||| | ||||||| |||| | | | || | | Sbjct 1642774 TCAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAA-CTTTATCGGACT 1642832 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | ||||||||||| ||||||||| ||||||| ||| Sbjct 1642833 ACAACATTCAAAAGGAATCTACACTTCATTTGGTG 1642867 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| | ||||| | ||||| || || Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | ||||||||||||||| ||||| ||||| || ||||||||||| Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | | || |||||| | ||||||| | | | | ||||| || Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||| ||||| ||| | || || || ||| Sbjct 1643066 ATTCAAAAGGAATCAACATTACACTTGGTATTA 1643098 >seq67 Length=1953875 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | ||||| | ||||| || | Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || |||||||||||| ||||| ||||| || |||||||||||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | || |||||| | ||||||| | | | | ||||| ||| Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1481166 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| |||||||| ||||||| ||| Sbjct 1481165 ATCCAAAAGGAATCTACTCTTCATTTGGTG 1481136 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | ||||| | ||||| || | Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | || |||||||||||| ||||| ||||| || ||||| || || Sbjct 1415604 GACTCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 1415545 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA--ACGTCAGCGATTATA 24168 || | |||||| || ||| |||||| | ||||||| | | | |||| ||||| | Sbjct 1415544 CAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCA--GATTACA 1415487 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||| ||||| ||||| || | ||||| ||| Sbjct 1415486 ACATCCAAAAGGAATCGACTCTCCATTTGGTG 1415455 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | ||||| | ||||| || | Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | ||||| | || |||||||||||| ||||| ||||| || ||||| ||||| Sbjct 1481513 GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1481454 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||||| | || || ||| | ||||||| | | | || || || ||| Sbjct 1481453 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAAC 1481394 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| |||||||| |||| || ||| Sbjct 1481393 ATTCAAAAGGAATCTACTCTTCACTTGGTG 1481364 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| || | ||||| | ||||| || | Sbjct 1481117 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACTATTACTCTGGAAGTGGAAAGCTCT 1481058 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | || |||||||||||| ||||| ||||| || |||||||| ||| Sbjct 1481057 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGACCAA 1480998 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | | || |||||| | ||||||| | | | | || || ||| Sbjct 1480997 CAACGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTTTGTCGGACTACAAC 1480938 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || ||||||| ||| Sbjct 1480937 ATTCAAAAGGAATCGACCCTTCATTTGGTG 1480908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || | ||||| || | |||||| | ||||| || | Sbjct 1416352 CAACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATC 1416293 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||| |||| || | ||||||||||| || || || ||||| || ||||| || Sbjct 1416292 CTCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGA 1416233 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| | || || | | || || ||| | ||||||| | | | | || || Sbjct 1416232 CCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTA 1416173 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| |||||||| |||| || ||| Sbjct 1416172 CAACATTCAAAAGGAATCTACTCTTCACTTGGTG 1416139 >seq4 Length=1266665 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 104602 ACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAA 104661 || || ||||||||||| || || ||||| | ||||| || | |||||| || ||| Sbjct 715160 ACACGCTTTTCAAAAAAGTTGGTTTTGCCTTGAAGAGAGATCAGGTCCATAAAGTCAAAA 715101 Query 104662 GGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACA 104721 ||||| | | ||| ||| || | ||||| | | | || ||||| |||||| Sbjct 715100 GGATTAGAGGAAAGGTAATGTTTGTCTTGACCAAGAGCAACTAGCAAGCGATCGGCCACA 715041 Query 104722 AATTCGATGTACTCGCACAT-AGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGC 104780 ||||| ||||| | |||||| || || |||||||| || | || || || |||||||| Sbjct 715040 AATTCAATGTATTGGCACATCAGTTTG-GCATTCATACCAATCAGAGCCACCGGTAAAGC 714982 Query 104781 GTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTC 104816 | || ||||| |||| ||||| | |||||||| Sbjct 714981 ATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTC 714946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935507454570