Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 seq28 118 1e-21 seq67 96.9 3e-15 seq34 95.1 1e-14 >seq2 Length=1684868 Score = 122 bits (134), Expect = 8e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||| | ||||| || ||||| | |||||| || ||||| ||| ||||| ||| Sbjct 856511 GATTGACAATTTGAAATTCACCGGCGAGCACACGGCGTGTATACAAGTTGGACGTATAGG 856452 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||||||| | |||||| |||||||||||||| || | || |||||||| |||| Sbjct 856451 GTTCAAAGCATTCGTTAAAGCCCAGGATTTGAGACGTTGACGCAGTGGGCATAGGTGCCA 856392 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || || || | |||||| | | || | |||| | | | ||||||||| Sbjct 856391 CAAGAAGAGAGTTTCGTACGCCGTGTTGACTAATTTTAGCCTTCAAAGCATCCCAATCCC 856332 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAA 145275 ||| || || ||| |||| ||||||||||||| ||||| Sbjct 856331 ATAAAGACGTAGGCGTCACACCCCACATGTCGTATTGCAA 856292 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 146401 ATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 ||||||| ||||| | | || ||||||||||| ||||| ||||| || ||||| | Sbjct 996946 ATACGTTCGTATAGCAGCATCGATATCGTCGCCATGGATGCCTAAAGCCACACGCATCAC 997005 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAG 146520 ||| ||||| || || ||| | || | ||||| | ||| || | ||||| | ||||| Sbjct 997006 CATATGTTGAGGGCGTTCCACAACACGGTTGTCCACCTTAAAAAGATAGCTGCGTTCCAG 997065 Query 146521 GGTTTTGTATCCGAAAAATTTGTACGTATAGTCTACGGCATGGTCGATAGCTTCGTTGAT 146580 || ||| | || ||||| ||||| ||| ||| | | ||||| ||| |||||| Sbjct 997066 AGTCTTGAAGCCAAAAAAGTTGTAGTCATAATCTCTTGAGTAATCGATGGCTGAGTTGAT 997125 Query 146581 T 146581 | Sbjct 997126 T 997126 >seq28 Length=432467 Score = 118 bits (130), Expect = 1e-21 Identities = 280/423 (66%), Gaps = 0/423 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| || || || ||||| | ||||||||| || | ||| || || | ||| Sbjct 234949 TTGACGATTTGGAATTCACCGGCAAGCACACGACGTGTGTATAGGTTGGAGGTATAAGGT 234890 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | ||||| ||||| ||||||| |||| ||| || ||||| |||||| Sbjct 234889 TCGAAGCATTCGTTGAAACCCAGAATTTGAGATGTCGATGCCGTAGGCATAGGTGCCACC 234830 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 ||||| || ||||||| ||||| | |||| | |||||| | || ||||||||||| Sbjct 234829 AATAACGAGTTGCGCACACCGTGTTGACTGATCTTTTCCTTCAATGTTGCCCAATCCCAT 234770 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 | || | || ||||| ||||||| ||||| |||| |||| | | | || || Sbjct 234769 AAAGATGATGGTGTCACGCCCCACATATCGTATTGCAGTTGACCCTTGGAGACAGGACTT 234710 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 ||||| | | ||| |||| | || || || |||||| || |||| || Sbjct 234709 CCTTGGTATGTTTCGTAGGTGCCTTCAACTTGAGCCAGTTCGCAAGAAGCTTCCAATGCC 234650 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 | || || || || |||||| |||||| | | ||||||||| || | Sbjct 234649 GCATGGTAGATGGTTTCAAAAATTTGTTGGTTGAGTTTCTTGGCTTCATCGGATTCAAAG 234590 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 || ||||| ||| | ||| ||||| || || || || | || | || || || ||| Sbjct 234589 GGATAGCGCATCAGCATAAATGCATCAGCAAGACCTTGCACACCAAGACCAATAGGGCGA 234530 Query 145478 TGT 145480 ||| Sbjct 234529 TGT 234527 >seq67 Length=1953875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || || ||||||||||||||||| || Sbjct 1416122 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 1416181 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || |||| | ||| || ||||| ||||| Sbjct 1416182 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1416241 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || |||||| || |||| | || | | |||| ||| || | Sbjct 1416242 ATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACT 1416301 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || ||||| || |||||||| |||||| Sbjct 1416302 TCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 1416349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| ||||| | |||||| ||||||||||||||||| || Sbjct 1480890 GCCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGA 1480949 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || | ||||| || || |||| || || || ||||| ||||| Sbjct 1480950 CAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGG 1481009 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||| ||||| Sbjct 1481010 GATACCTTCCTTGTC 1481024 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | ||||| |||||||| ||||||||||| | Sbjct 1415438 CCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGAC 1415497 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||||| || ||| | || ||||| |||||||| ||||| Sbjct 1415498 AAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 1415557 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 1415558 ATACCTTCCTTGTC 1415571 >seq34 Length=2241197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || | ||| ||||| ||||| | || || ||||||||||||||||| | || | Sbjct 1642884 CCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGAT 1642825 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | | | | || |||| ||||| || ||| | || | || || || || || || Sbjct 1642824 AAAGTTCTTCCA-TCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGG 1642766 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| ||||| ||||| ||||||| | || | | ||| | || || | Sbjct 1642765 AATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTAC 1642706 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||| || ||||| ||||| || || ||||| |||||| Sbjct 1642705 TTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATG 1642657 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || || |||| || || ||||||||||| |||||||| Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| ||| || || | ||||| || || |||| | ||| ||||| || |||||| Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || || |||| | || | || || | ||| || | Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || || || || || || || ||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012245384960