Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq67 150 2e-31 seq34 134 1e-26 seq22 116 3e-21 seq56 98.7 9e-16 seq8 95.1 1e-14 seq15 87.8 2e-12 >seq67 Length=1953875 Score = 150 bits (166), Expect = 2e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || || | |||||||| || ||| Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| ||||||| || || || ||||| || ||||| ||||| ||||| ||||||| Sbjct 1415604 GACTCTATCGA--CAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACC 1415547 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| ||||| || ||||| ||||||| || ||| || ||||||| Sbjct 1415546 AGCAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACA 1415487 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||| || || ||||| ||||| Sbjct 1415486 ACATCCAAAAGGAATCGACTCTCCATTTGGTGCT 1415453 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || ||| | |||||||| ||| Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| |||| ||||| || ||||| ||||| ||||| ||||| || Sbjct 1481513 GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1481454 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || |||||||||||||||| |||||| | || ||||| Sbjct 1481453 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAAC 1481394 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || || || ||||| Sbjct 1481393 ATTCAAAAGGAATCTACTCTTCACTTGGTGCT 1481362 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || || | |||||||| || ||| Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| |||||||||| || || || ||||| ||||| || || || Sbjct 1415832 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1415773 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || ||||| ||||||| |||||| | || ||||| Sbjct 1415772 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415713 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || ||||| Sbjct 1415712 ATCCAAAAGGAATCTACTCTTCACTTGGTGCT 1415681 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || | || || | |||||||| || ||| Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| |||||||||| || || || ||||| ||||| || || || Sbjct 1416060 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1416001 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | |||||||| || || ||||| ||||||| |||||| | || ||||| Sbjct 1416000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415941 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || ||||| Sbjct 1415940 ATCCAAAAGGAATCTACTCTTCACTTGGTGCT 1415909 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || |||| || | |||||||| || || Sbjct 1481801 ATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCCTCC 1481742 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | ||||| |||||||||||||| ||||| ||||| ||||| || |||||| Sbjct 1481741 GACTCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGACCAA 1481682 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| ||||| || ||||||| |||||| | || ||||| Sbjct 1481681 CAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1481622 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || ||||| Sbjct 1481621 ATCCAAAAGGAATCTACTCTTCACTTGGTGCT 1481590 >seq34 Length=2241197 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | ||||| || |||| || | ||||| || || ||| Sbjct 1642658 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCTTCT 1642717 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | ||||| | ||||||||||| ||||| ||||| ||||| ||||| ||| Sbjct 1642718 GATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGATCAA 1642777 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || || ||||||||||||| | ||| | || ||||| Sbjct 1642778 CAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTACAAC 1642837 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || ||||| ||||| Sbjct 1642838 ATTCAAAAGGAATCTACACTTCATTTGGTGCT 1642869 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| | || || | |||||||| || ||| Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| ||||||| | || ||||| || ||||| ||||| || || || || || Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||| || || ||||| ||||||| || || | ||||||||| Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || |||| || || || | ||| |||| || Sbjct 1643066 ATTCAAAAGGAATCAACATTACACTTGGTATTACGTCTACGAGGTGG 1643112 >seq22 Length=518773 Score = 116 bits (128), Expect = 3e-21 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||||| || || |||||||||||| ||||| ||||| ||||| |||| Sbjct 75752 TCTGACTCTATCGA--CAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTG 75809 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | |||||||| || || ||||| ||||||| ||||||| || || | Sbjct 75810 ATCAGCAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGCACTTTGTCTGACT 75869 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| |||||||| || || || || || Sbjct 75870 ACAACATCCAAAAGGAATCCACCCTCCACTTGGTCCT 75906 >seq56 Length=2073579 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| |||| || || || |||||||||||| ||||| ||||| ||||| |||| Sbjct 1295481 TCTGACTCTATTGA--CAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTG 1295538 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || | ||||| || || || ||||| ||||||| || ||| | || | Sbjct 1295539 ACCAGCAACGCTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACT 1295598 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||||| |||||||| || || || || || Sbjct 1295599 ACAACATCCAAAAGGAATCCACTCTTCACTTGGTCCT 1295635 >seq8 Length=1007018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| ||||||| | |||||||||||| || || ||||| ||||| |||||| Sbjct 757658 TCTGACTCTATCGACAACGTCAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGAC 757599 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| || || || ||||| ||||||| || ||| | || ||| Sbjct 757598 CAGCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGCCGTACTCTCTCTGACTAC 757539 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| |||||||| || || || || || Sbjct 757538 AACATCCAAAAGGAATCCACCCTTCACTTGGTCCT 757504 >seq15 Length=645780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 |||||||||||||| || || ||||| ||||| ||||| || || || | ||||| | Sbjct 322359 TGAAGCAAAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAGCAACGTTTGATTTTCG 322300 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | || || ||||| ||||||| || || | || ||||| || ||||| ||||||| Sbjct 322299 CTGGTAAGCAATTGGAAGATGGCCGTACCCTTTCTGACTACAACATCCAAAAGGAATCCA 322240 Query 25195 CGCTACATTTAGTGCT 25210 | || ||||| || || Sbjct 322239 CTCTCCATTTGGTTCT 322224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327503568610