Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 197 2e-45 seq4 168 7e-37 >seq1 Length=3895514 Score = 197 bits (218), Expect = 2e-45 Identities = 345/497 (69%), Gaps = 15/497 (3%) Strand=Plus/Minus Query 92823 TTTTTCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACTA-GTGATTGG-ATT 92880 |||||||||||| || || || |||| | || ||| || || | || | || ||| Sbjct 3275018 TTTTTCAAAGAAGTTGGTTTTGCCTTGAAGGGAGATCATATCCATGAAGTCAAAGGGATT 3274959 Query 92881 CTTGGCGTTATAATACTTTTC---ACC--GATCAACTCGTACAATAATCTATCAGCTACA 92935 ||| ||| |||| ||| || ||| || |||| ||| | | ||| || ||| Sbjct 3274958 AGTGGAGTTGTAATGCTTATCTTGACCAAGAGCAAC-----CAAGAGACGATCGGCGACA 3274904 Query 92936 AATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCG 92995 ||||| ||||| || |||| | | | ||||| || | |||| ||||| ||||| Sbjct 3274903 AATTCAATGTATTGGCACATAAGCTTGGAGTTCATACCAATAAGAGCAACAGGGAGAGCA 3274844 Query 92996 TCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACTA 93055 || ||||| || |||| || || |||| ||||| | |||||| || | | | Sbjct 3274843 TCCGTCAAAAATTCTTGTTCAATGGCAACAGCTTCCACAATGATTTCACGCACACGATCA 3274784 Query 93056 TTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCT 93115 | |||| || | || | ||| ||| || |||||||| || || | |||| Sbjct 3274783 CTGCTAGGTTGATGATGAATATGACCAAACAATAAACAAGCAAAGTCAGTGTGAAGACCT 3274724 Query 93116 TCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTG 93175 ||||| || | ||||| |||||| ||| || ||||| || | || || ||||||||| Sbjct 3274723 TCGTCACGACAGATCAATTCATTGGAGAAGGTCAAACCAGGCATCAAACCACGTTTCTTG 3274664 Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| || || || ||||| |||||| || || ||||||||||| || ||||| ||| Sbjct 3274663 AGCCAGAAGATGGAGGCAAAGGCACCAGAGAAGAAGATACCTTCCACAGCAGCAAAGGCC 3274604 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 |||| |||||| ||||| || ||| | ||||||||| ||||||||||| || Sbjct 3274603 ACAAGACGTTCAGCAAA---TGATTCATTGCCACTGATCCATCGGAAAGCCCAATCAGCC 3274547 Query 93296 TTTTTCTTAATACAAGG 93312 ||||||||||||||||| Sbjct 3274546 TTTTTCTTAATACAAGG 3274530 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || || | | ||| |||||| ||| | ||| || || |||||| Sbjct 3274346 ATATAAGTGTCAATCAATAAACTATAAGTTTCAGCATGAATATTTTCAATCATGATTTGG 3274287 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || ||| | ||||| | ||||| ||||| | ||| | | || | Sbjct 3274286 AATCCATAAAAGCATTTGGCTTCAGCGATCTTGACTTCATCCATAAAGTTTTGCACCAAG 3274227 Query 93482 TTTTCATTGACTATACCATCGGATGCT-GCaaaaaaaGCCAATATATGCTTTATA---AA 93537 ||||| ||||| |||||||| || ||| ||||| |||||||| | ||| ||| || Sbjct 3274226 TTTTCGTTGACAATACCATCCGA-GCTAGCAAAGAAAGCCAACACATGAGAGATAAAGAA 3274168 Query 93538 ATGTTTCTC-ATCATCTTTAAGCTTATCCCAATCGGATAG-ATCTTTTGAAAGATCGACT 93595 | ||| || | || || | || ||||| || ||| ||| || || || || | | Sbjct 3274167 ACGTTCGTCGTTGTTCATTTTG-TTTTCCCAGTC-ATTAGTATCCTTGGAGAGGTCAATT 3274110 Query 93596 TCTTCGACAGTCCAAAACGATGCTTC-TGCTTTTT 93629 ||||| ||||||| || || ||||| |||||||| Sbjct 3274109 TCTTCAGCAGTCCAGAAAGAAGCTTCGTGCTTTTT 3274075 >seq4 Length=1266665 Score = 168 bits (186), Expect = 7e-37 Identities = 272/388 (70%), Gaps = 5/388 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || |||||||| ||||| || |||||| | |||||| || | ||| || Sbjct 715050 ATCGGCCACAAATTCAATGTATTGGCACATCAGTTTGGCATTCATACCAATCAGAGCCAC 714991 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 |||| ||| || ||||| || |||| ||||| |||||||||| | ||||| | Sbjct 714990 CGGTAAAGCATCTGTCAAAAATTCTTGTTCGATAGCAACGGCTTCAACGATAATTTCCAG 714931 Query 93046 TACTCTACTATTTGGTGGTTTTTGTACGAC-ATAATTGTACATTAAGCACGCAAAGTCGG 93104 || | | | ||| ||| || | || || | ||| | ||| |||||||| | Sbjct 714930 GACACGAG-AGTTGCTGGGTTGGTGATGAAGATGACCAAACAAAAGGCATGCAAAGTCAG 714872 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 |||| | ||||||||| || |||| |||||| |||||| || || || | || | Sbjct 714871 TATGGAGACCTTCGTCACGACTGATCAGTTCATTGGAGAATGTCAACCCAGGCATCAAAC 714812 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | |||||||||||||| || || || ||||| ||| ||||| || || |||||||| | Sbjct 714811 CACGTTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGGAAAAGAAGATGCCTTCCACAG 714752 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAG 93284 | || || || |||| |||||| ||||| | || |||| || |||||| |||| Sbjct 714751 CAGCGAAAGCAACAAGACGTTCAGCAAATGATTCG---TTACCACTAATCCATCGGAAAG 714695 Query 93285 CCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||||||| || ||||| || |||||||| Sbjct 714694 CCCAATCCGCCTTTTTTTTGATACAAGG 714667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||| | ||||| || || || ||||| ||||| || || ||| | ||||| | || Sbjct 714470 TTTCTGCATGGATGTTTTCGATCATTATTTGAAATCCATAAAAGCATTTGGCTTCGGCGA 714411 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | ||| | | || | ||||||||||| |||||||| || || Sbjct 714410 TCTTGACTTCGTCCATAAAGTTTTGCACCAAGTTTTCATTGACAATACCATCTGAGCTTG 714351 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAAT---GTTTCTCATCA-TCTTTAAGCTTATCC 93565 |||| |||||||||| ||| ||||| | ||| || ||| || || | || ||| Sbjct 714350 CAAAGAAAGCCAATACATGAGAAATAAAGTACCGTTCATCGTCAGTCATTTTG-TTTTCC 714292 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTC-TGC 93624 |||||| ||||| || ||||||| ||||| | ||||| || || ||||| ||| Sbjct 714291 CAATCGATGTTGTCTTTCGAGAGATCGATCTCTTCAGCTGTCCAGAAAGAGGCTTCATGC 714232 Query 93625 TTTTT 93629 ||||| Sbjct 714231 TTTTT 714227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860145688560