Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq34 131 1e-25 seq67 127 2e-24 >seq34 Length=2241197 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || |||||||||||||| || || | |||||||| |||||||| ||||| ||| | Sbjct 1642655 AACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCT 1642714 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| | | | || || ||||||||| ||||| ||||| ||||| ||| Sbjct 1642715 TCTGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGAT 1642774 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 |||||| | || |||| || || || ||||| |||||| | |||| | | || || Sbjct 1642775 CAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTAC 1642834 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||||||||| ||||| ||| | ||||| || ||||| Sbjct 1642835 AACATTCAAAAGGAATCTACACTTCATTTGGTGCTTCGTCTTCGTGGTGG 1642884 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || |||||||| ||||| ||||| |||| || Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| | | | | || |||||||| ||| ||||| ||||| | || |||||| Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | ||| || || |||||||||||| || | | ||||| ||| Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| ||||| ||| |||| || || || ||||| || ||||| Sbjct 1643066 ATTCAAAAGGAATCAACATTACACTTGGTATTACGTCTACGAGGTGG 1643112 >seq67 Length=1953875 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 || || ||||||||||| ||||| || | || ||||| ||||||||| ||||| |||| Sbjct 1416354 TTCAACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAA 1416295 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || ||| || ||| | | || ||||||||||| || || ||||| |||| Sbjct 1416294 TCCTCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCA 1416235 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 || |||||| | || || | ||| || ||||||||||||||| ||| | | || Sbjct 1416234 GACCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGAC 1416175 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| |||||||| || || || ||| | ||||| || ||||| Sbjct 1416174 TACAACATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1416122 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| ||||| || ||||| ||||| |||| | Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | | || |||||||| ||| ||||| ||||| | || ||||||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | ||| || || |||||||||||| ||| | | ||||| || Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAAC 1481166 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || ||||| ||| | ||||| || ||||| Sbjct 1481165 ATCCAAAAGGAATCTACTCTTCATTTGGTGCTCCGTCTCCGTGGTGG 1481119 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||| ||||||||||| || ||||| | || ||||| ||||||||| ||||| |||| | Sbjct 1481805 AAACATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATC 1481746 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 | ||| || | | | || || |||||||| ||||| ||||| |||| ||| Sbjct 1481745 CTCCGACTCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGA 1481686 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 |||||| | || || | ||| || ||||| ||||||||| ||| | | || || Sbjct 1481685 CCAACAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTA 1481626 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| |||||||| || || || ||| | ||||| || ||||| Sbjct 1481625 CAACATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1481575 Score = 118 bits (130), Expect = 9e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || |||| ||||| || ||||| ||||| |||| | Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| | | | | || |||||||| ||| ||||| ||||| |||| || || Sbjct 1415604 GACTCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 1415545 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| || || || |||||||||||| ||| || | ||||| || Sbjct 1415544 CAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAAC 1415485 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATAAA 111420 || ||||| ||||| || || ||||| ||| | ||||| || ||||| ||||||| Sbjct 1415484 ATCCAAAAGGAATCGACTCTCCATTTGGTGCTTCGTCTTCGTGGTGGACAATAAA 1415430 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || |||| ||||| || ||||| ||||| |||| | Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| | | | | || || ||||| ||| || || ||||| ||||| |||||| Sbjct 1415832 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1415773 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || || |||||||||||| ||| | | || || || Sbjct 1415772 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415713 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || || || ||| | ||||| || ||||| Sbjct 1415712 ATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1415666 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || |||| ||||| || ||||| ||||| |||| | Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| | | | | || || ||||| ||| || || ||||| ||||| |||||| Sbjct 1416060 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1416001 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | |||| ||| || || |||||||||||| ||| | | || || || Sbjct 1416000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415941 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| |||||||| || || || ||| | ||||| || ||||| Sbjct 1415940 ATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGTCTCCGTGGTGG 1415894 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| ||||| || ||||| ||||| |||| | Sbjct 1481117 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACTATTACTCTGGAAGTGGAAAGCTCT 1481058 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | | || |||||||| ||| ||||| ||||| | || ||| ||| Sbjct 1481057 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGACCAA 1480998 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| || || |||||||||||| ||| || | || || || Sbjct 1480997 CAACGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTTTGTCGGACTACAAC 1480938 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG-CAATA 111418 || ||||| ||||| || || ||||| ||| | ||||| || ||||| ||||| Sbjct 1480937 ATTCAAAAGGAATCGACCCTTCATTTGGTGCTTCGTCTTCGTGGTGGCCAATA 1480885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423039515354800