Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 seq78 104 5e-17 seq31 104 5e-17 seq8 87.8 4e-12 >seq1 Length=3895514 Score = 129 bits (142), Expect = 1e-24 Identities = 314/472 (67%), Gaps = 4/472 (1%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||||||||| || || ||||| ||| ||||| || | ||||| Sbjct 3275053 TTCATGACACCAGCACGTTGATAATCGGAGACACGTTTTTCAAAGAAGTTGGTTTTGCCT 3274994 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | || ||||| | ||||||||||| ||||| || |||| ||||| ||||| || Sbjct 3274993 TGAAGGGAGATCATATCCATGAAGTCAAAGGGATTAGTGGAGTTGTAATGCTTATCTTGA 3274934 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || || |||| || || || ||||| || | || || | ||| || | ||| Sbjct 3274933 CCAAGAGCAACCAAGAGACGATCGGCGACAAATTCAATGTATTGGCACATAAGCTTGGAG 3274874 Query 251704 TTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763 ||||| ||||| | | | ||| | || || | ||||| | ||| ||||||| Sbjct 3274873 TTCATACCAATAAGAGCAACAGGGAGAGCATCCGTCAAAAATTCTTGTTCAATGGCAACA 3274814 Query 251764 GCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGA--GT 251821 || ||| | | ||| | ||| | || | || ||| | | | ||| Sbjct 3274813 GCTTCCACAATGATTTCACGCACACG-ATCACTGCTAGGTTGATGATGA-ATATGACCAA 3274756 Query 251822 ACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACA 251881 ||| | |||| | ||| ||||| ||||| |||| ||| || || ||||| | Sbjct 3274755 ACAATAAACAAGCAAAGTCAGTGTGAAGACCTTCGTCACGACAGATCAATTCATTGGAGA 3274696 Query 251882 GACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAG 251941 || |||||||||| ||||| ||| ||||||||||||| | | ||||| |||| Sbjct 3274695 AGGTCAAACCAGGCATCAAACCACGTTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCAG 3274636 Query 251942 AGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAACGA 251993 |||| | | ||| || ||| | | || ||||| || |||||||| || Sbjct 3274635 AGAAGAAGATACCTTCCACAGCAGCAAAGGCCACAAGACGTTCAGCAAATGA 3274584 Score = 120 bits (132), Expect = 6e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 280638 CCTCTGACTGCCAAGAATGTTGAGGACCATATGACC-AAGCTGGGTCTGGACCCCGAGTT 280696 || |||||||||||| | |||| | ||| ||||| ||| ||| | ||||||| || || Sbjct 351820 CCACTGACTGCCAAGGAAATTGAAAAGCATTTGACCGAAGTTGGAT-TGGACCCTGAATT 351762 Query 280697 TACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGG 280756 | | ||||| || || || || ||||||||||| || || ||||||||| | || || || Sbjct 351761 TGCTACTCATTCACGTATCCGTGGTCTTTCTGGTGGGCAAAAGGTCAAATTGGTGATTGG 351702 Query 280757 AGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGA 280816 || || ||||| | | ||||| || | || ||||| || ||||| || |||||||| Sbjct 351701 TGCCGCCATGTGGAACAAGCCTCATATGTTGGTGCTCGATGAACCTACGAATTATCTGGA 351642 Query 280817 CCGCGAGAGCCTGGGCGC 280834 || ||| ||||||| Sbjct 351641 TCGTGAGTCTTTGGGCGC 351624 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| | ||| |||| || ||||| |||||||||||| |||| | | || || || Sbjct 352856 TGCCTATTGGTGCTCTTTCTGGTGGATGGAAGATGAAGTTGGCTTTAGCGCGTGCTATGT 352797 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || ||| ||| | ||| |||| || || || ||||| ||| |||| ||| | Sbjct 352796 TGATGAATGCTGATATTCTATTGCTGGACGAACCTACCAATCACTTGGATGTTGTCAATG 352737 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | |||||| ||| |||||| || |||||| || |||| | ||||| |||| Sbjct 352736 TCGCCTGGTTAGAAAACTACCTTCTGGGTTTGAAGACGGTAACTTCGATGATTGTATCTC 352677 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 |||||||||| || | ||| || ||||||| |||||| || ||||| Sbjct 352676 ACGACTCTGGATTTTTGGATCATGTATGCTCTGACATCATACATTATGA 352628 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||| ||||| | || || || || || ||||||||||| ||||| ||||| Sbjct 352216 GTATGGAAGCACCCCAATCTTCGTATTGCCTATGTTGCTCAGCACGCATTCCATCACATT 352157 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGGGCAG 280370 || || || |||||| || || ||| ||||||| || ||||| ||||| | ||| | Sbjct 352156 GAAAAACATTTGGACAGCACACCCAACGAATACATCCAATGGCGATATGCGACTGGTGAA 352097 Query 280371 GATC 280374 |||| Sbjct 352096 GATC 352093 >seq78 Length=1913450 Score = 104 bits (114), Expect = 5e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 280254 TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAG 280313 ||||||||||| ||| |||| || |||||||| ||||| ||||||||||| ||||| || Sbjct 616224 TGGAAGCATCCTAACTTGCGTATTGCTTACGTTGCTCAACACGCTTTCCATCACATTGAA 616165 Query 280314 AACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 || || ||||||| || |||||| |||| || || ||||| || || Sbjct 616164 AAGCATTTGGACATCACCCCTAACGAATATATCCAATGGCGTTACGC 616118 Score = 104 bits (114), Expect = 5e-17 Identities = 173/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 280638 CCTCTGACTGCCAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTT 280697 ||| |||| ||||| | | || | ||| |||| | | ||| |||| || || || Sbjct 883766 CCTTTGACCTCCAAGGAAATCGAAAAGCATTTGACTGAAGTTGGTTTGGAACCTGAATTC 883825 Query 280698 ACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGA 280757 | ||||||||||| || || ||||| || || || || |||||||| | || || || Sbjct 883826 GCTACTCACTCTCGTATCCGTGGTCTCTCCGGTGGTCAAAAGGTCAAGTTGGTTATTGGT 883885 Query 280758 GCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGAC 280817 || ||| ||||| | | |||||| || | ||||| ||||| |||||||| ||| |||| Sbjct 883886 GCTGCTATGTGGAACAAGCCTCACATGTTGGTTCTTGACGAACCTACCAATTATTTGGAT 883945 Query 280818 CGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTC 280877 || || || || ||| || || |||| | | || ||||| || || || || Sbjct 883946 CGTGAATCTCTCGGTGCTTTGGCTGGTGCTATCAAGGAATACGGCGGTGGTGTTGTCATC 884005 Query 280878 ATTTCTCACA 280887 || |||||| Sbjct 884006 GTTACTCACA 884015 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| | ||| |||| || |||||||||||||||||| |||| || | || || || Sbjct 616880 TGCCCATTGGTGCTCTCTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCCGTGCTATGT 616821 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| || | || | || || || ||||| ||| |||| ||||| Sbjct 616820 TGATGAACGCTGATATCTTGTTGTTGGACGAACCTACCAATCACTTGGATGTTGTCAACG 616761 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | |||||| | | |||||| |||| |||| ||| | ||| ||||||| |||| Sbjct 616760 TTGCCTGGTTGGAAAACTACCTTTTGGGTCTCAAGACTGTCACCTCCATCATTGTGTCTC 616701 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 |||||||||| ||| | ||| ||| || || | || || || ||||| Sbjct 616700 ACGACTCTGGTTTCTTGGATCACGTCTGTTCCGATATTATCCATTATGA 616652 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| | ||| |||| || |||||||||||||||||| |||| || | || || || Sbjct 882716 TGCCCATTGGTGCTCTCTCTGGTGGTTGGAAGATGAAGTTGGCTCTTGCCCGTGCTATGT 882775 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| || | || | || || || ||||| ||| |||| ||||| Sbjct 882776 TGATGAACGCTGATATCTTGTTGTTGGACGAACCTACCAATCACTTGGATGTTGTCAACG 882835 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | |||||| | | |||||| |||| |||| ||| | ||| ||||||| |||| Sbjct 882836 TTGCCTGGTTGGAAAACTACCTTTTGGGTCTCAAGACTGTCACCTCCATCATTGTGTCTC 882895 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 |||||||||| ||| | ||| ||| || || | || || || ||||| Sbjct 882896 ACGACTCTGGTTTCTTGGATCACGTCTGTTCCGATATTATCCATTATGA 882944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 280254 TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAG 280313 ||||||||||| ||| |||| || || ||||| ||||| ||||||||||| ||||| || Sbjct 883373 TGGAAGCATCCTAACTTGCGTATTGCCTACGTTGCTCAACACGCTTTCCATCACATTGAA 883432 Query 280314 AACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 || || ||||||| || || ||| |||| || || ||||| || || Sbjct 883433 AAGCATTTGGACATCACCCCCAACGAATATATCCAATGGCGTTACGC 883479 >seq31 Length=406002 Score = 104 bits (114), Expect = 5e-17 Identities = 127/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 280194 GGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA---GGCCACTGAGGGGTCC 280250 ||||| |||||| | ||||| | |||||||| || | | || || || | | Sbjct 331302 GGTAAATCTACCTTGATCAAGCTTCTGACTGGTGAAATTGAATCGGACATTG---GTACA 331246 Query 280251 GTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATC 280310 || |||||||||||||| | || || || || || ||||| ||||| ||||| ||||| Sbjct 331245 GTGTGGAAGCATCCCAATCTCCGTATTGCCTATGTGGCTCAACACGCATTCCATCACATT 331186 Query 280311 GAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGCAA 280362 || || || || ||||| ||||| ||| ||||||| || ||||| ||||||| Sbjct 331185 GAAAAGCATCTCGACATCACTCCCAACGAATACATCCAATGGCGGTATGCAA 331134 >seq8 Length=1007018 Score = 87.8 bits (96), Expect = 4e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 280637 ACCTCTGACTGCCAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTT 280696 ||| ||||||| ||| | | || | ||| | || || | || || || || || || Sbjct 529747 ACCCCTGACTGGAAAGGAAATCGAAAAACATCTTACTGAGGTTGGACTCGAACCTGAATT 529688 Query 280697 TACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGG 280756 | || || ||||| || || ||||| ||||| || || ||||| ||| | || || || Sbjct 529687 CGCTACCCATTCTCGTATCCGTGGTCTCTCTGGTGGACAAAAGGTGAAATTGGTGATTGG 529628 Query 280757 AGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGA 280816 || || ||||| | | ||||| || | || || ||||| |||||||| |||||||| Sbjct 529627 CGCTGCCATGTGGAACAAGCCTCATATGCTGGTACTGGACGAACCTACCAATTATCTGGA 529568 Query 280817 CCGCGA 280822 ||| || Sbjct 529567 CCGTGA 529562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835562099054