Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 116 7e-21 seq4 109 1e-18 seq1 107 4e-18 seq2 96.9 7e-15 >seq28 Length=432467 Score = 116 bits (128), Expect = 7e-21 Identities = 488/767 (64%), Gaps = 10/767 (1%) Strand=Plus/Minus Query 244678 GGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTC 244737 ||||| ||||| ||||| || || || || || || | | | | ||| | ||| || || Sbjct 234386 GGCGATACTGGCAAGGTTACACACAGCGACTTCATCAGGGCTAGAGTATTCGACGATTTC 234327 Query 244738 GGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCA 244797 || || || |||||||| ||||||||||||| || || ||||| || || |||||| Sbjct 234326 TGTACAAAGATTACTGCATTTGATGGTGCCCAAGTTTTGTTGATTTGATTTCCGGTTGCA 234267 Query 244798 GGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTT 244857 || |||||||||||||| || || ||| || || || || | |||| | Sbjct 234266 AGCATCCTTGTAGAGCATAAAAGGGTTCCCAGTTTCCGTTTGAGCTTCCAGGATAGCATA 234207 Query 244858 CCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTA 244917 ||| | | | ||||| | || || || ||| || ||||| || Sbjct 234206 CCACAATTTCTGCGCCTTCATGGTTTCACGCGCACGGCCTTCCCGTTCGTATTTTTCATA 234147 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACA 244976 || || || ||| ||||| || || | || || | | | | | || || | Sbjct 234146 GAGCTGTTCAAATTCGTCTCCCCAAACATCTTGGAGCCCACG-CGCTTCACTTGGACAAA 234088 Query 244977 TGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGG 245036 | ||| ||||| | | || | | ||| ||||| || ||||||||||||| Sbjct 234087 ACAAGGACCAGTCGCCATTCGCTTCCACACGTTTCATAAAGAGATCAGGGATCCAGAGGG 234028 Query 245037 CCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAA 245096 | | ||||| || | | | || ||| |||| ||||| | || ||||| | Sbjct 234027 CATAAAAGAGATCACGAGCACGGATTTCATCCTTGCCAACATTCTTGCGAAGATCCAAGA 233968 Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 || ||||| ||| | ||||| || |||| || | ||| | || || || || |||| Sbjct 233967 AGGTAAAGATGTCCGCATGCCAAGGTTCCAAATACATAGCAAAAGCACCAGGGCGTTTGT 233908 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACT 245212 |||| || || |||| | | |||||| |||||||| || || |||| | Sbjct 233907 TGCCACCTTGATCCA----CGTAACGAGCGGTATTGTTGAAGACACGAAGCATAGGAAGA 233852 Query 245213 ATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTG 245272 || || || |||| ||||||||| ||| |||||| | ||| || | | | |||| | Sbjct 233851 ATACCATTGGAGTAGCCGTTGGTTCCCGCGATGTAAGAGCCTGTGGCACGAATGTTGTGG 233792 Query 245273 ATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCT 245332 ||| | || | || || || |||||| || |||| || |||| || || Sbjct 233791 ATGTTGAGACCAATGCCACCTGCCGTCTTGGAAATTTGGGCACACACTTTGAGAGTTTCG 233732 Query 245333 GCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC 245392 || || || ||| ||| |||||| |||||| || |||||||| || ||||| Sbjct 233731 TAGATACCTTCGATGGAGTCTTCTTTCATGGTGAGCAAGAAACAGGAGGAGAGTTGGGGT 233672 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || ||| | |||||| | || || || || ||||| ||||| Sbjct 233671 CGAGGAGTGCCTGCGTTGAATAAGGTAGGACTAGCATGGGTGAAGTA 233625 >seq4 Length=1266665 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || || ||||| || |||||||| ||||| || ||||| ||| ||| | | Sbjct 714667 CCTTGTATCAAAAAAAAGGCGGATTGGGCTTTCCGATGGATT---AGTGGTAACGAATCA 714723 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | || || || || | || || || ||||||||||| || || ||||| Sbjct 714724 TTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTT 714783 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAACG 42810 ||||| ||||||||||||||| || ||| | |||||| || | || ||||| || | Sbjct 714784 GCCTCTATCTTCTGGCTCAAG--AAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATG 714841 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTT 42862 |||| ||||| | ||||| || || |||| |||||||| ||||| |||| Sbjct 714842 AACTGATCAGTCGTGACGAAGGTCTCCATACTGACTTTGCATGCCTTTTGTT 714893 >seq1 Length=3895514 Score = 107 bits (118), Expect = 4e-18 Identities = 341/518 (66%), Gaps = 18/518 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || || || ||||| ||||| || ||||| || |||||| ||| | | | | | Sbjct 3274530 CCTTGTATTAAGAAAAAGGCTGATTGGGCTTTCCGATGGATC---AGTGGCAATGAATCA 3274586 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | || || |||||| | || || || || ||||||||||| || ||||| Sbjct 3274587 TTTGCTGAACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTT 3274646 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGATGCCCGGACTCACCTTCTCGAACG 42810 ||||||||||||||||||||| || ||| | |||||| || | |||||||| || | Sbjct 3274647 GCCTCCATCTTCTGGCTCAAG--AAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATG 3274704 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 || | ||| | | ||||| || || || | |||||||| || | ||| | | | Sbjct 3274705 AATTGATCTGTCGTGACGAAGGTCTTCACACTGACTTTGCTTGTTTATTGT--TTGGTCA 3274762 Query 42871 ACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||| ||| ||| | || || || || || | ||||| ||| || || | Sbjct 3274763 TATTCATCATCAA--CCTAGCAGTGATCGTGTGCGTGAAATCATTGTGGAAGCTGTTGCC 3274820 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 || || | || || | ||| | | || || || | || | || |||||| | | Sbjct 3274821 ATTGAACAAGAATTTTTGACGGATGCTCTCCCTGTTGCTCTTATTGGTATGAACTCCAAG 3274880 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTC-TC 43046 || |||||| | ||||| | | |||||||| | |||| || ||| | |||| Sbjct 3274881 CTTATGTGCCAATACATTGAATTTGTCGCCGATCGTCTCTTGGTTGC--TCTTGGTCAAG 3274938 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | || | |||||| | | ||||| ||||| ||||| | ||||| | | ||| Sbjct 3274939 ATAAGCAT-TACAACTCCACTAATCCCTTTGACTTCATGGATATGATCTCCCTTCAAGGC 3274997 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 || |||||||| || || || || ||| |||| || || Sbjct 3274998 AAAACCAACTTCTTTGAAAAACGTGTCTCCGATTATCA 3275035 >seq2 Length=1684868 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 244676 AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATC 244735 ||||| | ||||| || ||||| || || | || || | ||| || | ||||| Sbjct 855948 AGGGCAATACTGGCAAGATTGCAAACAGCGGCTTCGTCAGGACTGGAATATTCCACAATT 855889 Query 244736 TCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTG 244795 |||||||| ||||| ||||| |||||||| ||||||| || || ||||| ||| ||| Sbjct 855888 TCGGTGCAAAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTGGATTTGCGGTTA 855829 Query 244796 CAGGCGTCCTTGTAGAGCATGAAGGG 244821 || ||||||||||| | |||||| || Sbjct 855828 CATGCGTCCTTGTATAACATGAATGG 855803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338090401440