Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-34 seq34 131 4e-25 seq5 129 1e-24 seq67 123 6e-23 seq12 123 6e-23 seq4 107 5e-18 >seq18 Length=557977 Score = 161 bits (178), Expect = 2e-34 Identities = 262/371 (71%), Gaps = 7/371 (2%) Strand=Plus/Minus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || || ||||| || || || |||| ||||| | ||||| || Sbjct 112249 CCAAGCCTCCACCTCGGAATTGTACGGTAAGGTCGTTGAAACCCCTCAAAAGGAAACCAC 112190 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || ||||| || ||| || ||||| || ||| | || | ||| ||||| ||| Sbjct 112189 GCCCTTCTATCCCCGTTCCCCCTATGGTGTGGCTAAGCTCTATGGTTACTGGAT-TGTGG 112131 Query 72536 A-AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGA 72594 ||||| ||||| || || |||||||||| || ||| ||| ||||| ||||| Sbjct 112130 TCAATTATCGTGAATCCTACAACATGTATGCCTGTAACGGTATTCTCTTCAACCACGAAT 112071 Query 72595 GTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTT 72654 |||| | |||||| | || ||||| || || ||| | | ||||| |||| Sbjct 112070 CTCCCCGCCGAGGCCGTACCTTTGTGACCCGCAAGATCTCCCGTGCTGTCGCCGATATC- 112012 Query 72655 TCAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGG 72712 || | | | || || |||| |||| |||||||| || ||||| || | |||||||| Sbjct 112011 -CACTTGGGCCGTCAAGAATGTCTGTACCTCGGTAACATTGATGCAAAGCGTGATTGGGG 111953 Query 72713 ATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGA 72772 |||| ||||||||||| |||| ||||||||||||||||||||||| || ||||| Sbjct 111952 TCATGCCAAGGATTACGTTGAAGGTATGTGGTTGATGCTGCAACAAGACCAACCTGATGA 111893 Query 72773 CTATGTGATTG 72783 || ||| |||| Sbjct 111892 CTTTGT-ATTG 111883 >seq34 Length=2241197 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || ||| ||||| || || ||||| | Sbjct 1642884 CCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGAT 1642825 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||||||||| ||||| ||||| ||||| || |||||| | || Sbjct 1642824 AAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGA 1642765 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || ||||| || || || || || ||||| ||||||||| Sbjct 1642764 ATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACT 1642705 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| |||||||| || || || ||||| Sbjct 1642704 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCAT 1642658 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| || || | | || || || ||||| ||||| || || || || Sbjct 1643077 TTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAA 1643018 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||| || ||| ||||| ||||| || || || || || ||| ||||| Sbjct 1643017 GATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTT 1642958 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || ||||| || ||||| ||||| | || || || || || || || |||||||| Sbjct 1642957 GTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGAC 1642898 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 1642897 AAAGATTTGCAT 1642886 >seq5 Length=1173598 Score = 129 bits (142), Expect = 1e-24 Identities = 259/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | || || || ||||| || || |||| |||||| | ||||| ||| Sbjct 870211 CAAGCCTCCACCTCTGAATTATATGGTAAGGTTGTCGAAACTCCTCAAAAGGAAACCACT 870152 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || || ||||| ||||| ||||| || ||| | |||| ||| |||||| Sbjct 870151 CCCTTCTACCCTCGCTCTCCTTATGGTGTGGCCAAGCTCTACGGTTACTGGATCGTGGTC 870092 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 || || ||||| || || |||||||||| || ||| || ||||||||||| | Sbjct 870091 AACTATCGTGAATCCTACAACATGTATGCTTGTAACGGTATCCTCTTCAATCACGAATCT 870032 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 || | || | ||||| || ||||| ||| | |||| || || ||| | | Sbjct 870031 CCTCGTCGTGGTCGCACCTTCGTAACCCGTAAGATCTCCAAGGCTGTGGCTGATA--TCC 869974 Query 72657 AATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGAT 72714 | | | | || || ||||| |||| | ||||| || ||||| || | || ||||| Sbjct 869973 ATTTGGGCCGTCAAGAATGCTTGTACTTGGGTAACATTGATGCAAAGCGTGACTGGGGTC 869914 Query 72715 ATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACT 72774 |||| ||| || || |||| |||||||||||| |||||||||| || || |||| Sbjct 869913 ATGCTCGGGACTATGTCGAAGGTATGTGGTTGATGTTGCAACAAGACCAACCTGAAGACT 869854 Query 72775 ATGTGATTGCAACAGGGAAAAC 72796 |||| | || || || |||| Sbjct 869853 TTGTGTTGGCTACTGGTGAAAC 869832 >seq67 Length=1953875 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||| ||||| || || ||||| | Sbjct 1416122 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 1416181 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| |||||||| || || ||||| ||||| ||||| ||||| Sbjct 1416182 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGG---TCTGGA 1416238 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| |||||||| ||| || || || || || ||| ||||| Sbjct 1416239 GGAATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCC 1416298 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || || |||||||||||||| || ||||| Sbjct 1416299 ACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 1416348 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||| ||||| || || ||||| | | Sbjct 1481347 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 1481406 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || |||||||||||||| || || || |||| ||| || ||| | || Sbjct 1481407 AGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGA 1481466 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || || || || || |||||| || || ||||| || ||| ||| Sbjct 1481467 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCT---TTCC 1481523 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||| || || ||||| Sbjct 1481524 ACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | ||| || | ||||| || ||| ||||| || || ||||| Sbjct 1480888 TGGCCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCC 1480947 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | ||||| || ||||| ||||| || || || ||||||| || ||||| Sbjct 1480948 GACAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGA 1481007 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| ||||| || || || || || |||||| || || || || || ||| | Sbjct 1481008 GGGATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---T 1481064 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 1481065 TCCACTTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 >seq12 Length=2511101 Score = 123 bits (136), Expect = 6e-23 Identities = 253/370 (68%), Gaps = 7/370 (2%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| ||| | || || ||||| || || || |||| ||||| | ||||| ||| Sbjct 922753 CAAGCCTCTACCTCGGAATTGTACGGTAAGGTTGTTGAAACCCCTCAAAAGGAAACCACT 922812 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || || || || ||| || || || || ||| | |||| || ||||| ||| Sbjct 922813 CCCTTCTACCCCCGTTCCCCCTATGGCGTGGCCAAGCTCTACGGCTACTGGAT-TGTGGT 922871 Query 72537 -AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAG 72595 || |||||||| || || |||||||| | || || || ||||| ||||| Sbjct 922872 CAACTACCGTGAATCTTACAACATGTACGCCTGTAATGGTATCCTCTTCAACCACGAATC 922931 Query 72596 TCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTT 72655 || |||| | | ||||||||||| || ||| | | || || |||| Sbjct 922932 ACCTCGTCGAGGACGTACCTTCGTGACTCGCAAGATCTCCCGTGCCGTTGCCGATATC-- 922989 Query 72656 CAATGGTGTCG--AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGA 72713 || | | |||| || |||| ||||| | |||||||| ||||| || | |||||||| Sbjct 922990 CATTTGGGTCGTCAAGAATGTCTGTATTTGGGTAATATTGATGCGAAGCGTGATTGGGGT 923049 Query 72714 TATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGAC 72773 |||| ||||| || || |||| |||||||||||| ||||||||||| || || ||| Sbjct 923050 CATGCCAAGGACTATGTGGAAGGTATGTGGTTGATGTTGCAACAAGATGAACCTGAAGAC 923109 Query 72774 TATGTGATTG 72783 | ||| |||| Sbjct 923110 TTTGT-ATTG 923118 >seq4 Length=1266665 Score = 107 bits (118), Expect = 5e-18 Identities = 173/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 269098 GAAGCAGTTACAAACGAAAAAGAGTTCATTTGT--GACGCTATCCCATGTTCTATGATCG 269155 ||||| ||| | | |||| |||| || |||| || ||| | || || |||| | Sbjct 714946 GAAGCCGTTGCTATCGAACAAGAATT--TTTGACAGATGCTTTACCGGTGGCTCTGATTG 715003 Query 269156 GTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGG 269215 ||||||||||| | || ||| ||||| || ||||| ||||| ||||| | | | Sbjct 715004 GTATGAATGCCAAACTGATGTGCCAATACATTGAATTTGTGGCCGATCGCTTGCTAGTTG 715063 Query 269216 CACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTT 269275 | || ||| | || ||| ||| ||| ||||| || | ||||||||| || || | Sbjct 715064 CTCTTGGTCAAGACAAACATTACCTTTCCTCTAATCCTTTTGACTTTATGGACCTGATCT 715123 Query 269276 CGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTG 269335 | || |||| || || ||||| || ||||||||||| |||||||||||| || ||| Sbjct 715124 CTCTTCAAGGCAAAACCAACTTTTTTGAAAAGCGTGTGTCTGACTATCAACGTGCTAGTG 715183 Query 269336 TAATGAA 269342 | ||||| Sbjct 715184 TGATGAA 715190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652979253732