Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq34 127 2e-24 seq67 102 9e-17 >seq34 Length=2241197 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||| || ||||| || ||||| |||||||||||||||||||||| Sbjct 1643113 ACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGA 1643054 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || ||| | || || | ||||| ||||| || || || || ||||| |||| || Sbjct 1643053 TAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGG 1642994 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||| || |||||||||| ||| | | | | ||| ||||||| Sbjct 1642993 GATACCTTCCTTGTCTTGAATCTTTTGTTTGA-CGTTGTCGATAGAGTCAGAGGATTCCA 1642935 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || |||||||| || || ||||| |||||||||||||| Sbjct 1642934 CTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||||||||||| ||||| || | | ||| | | Sbjct 1642873 ACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCC 1642814 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| ||||| |||||||| || ||||| || || || | || | | ||||| Sbjct 1642813 ATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTT 1642754 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||||| |||| | | | | || ||||| || || | || || Sbjct 1642753 GTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAAT 1642694 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||||| || || ||||| ||||| |||||||| || Sbjct 1642693 GGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 >seq67 Length=1953875 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| |||| ||||| || | || || | || |||||||| || Sbjct 1416158 TCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAG 1416217 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || || ||||| | || | | ||||| || |||||||||||||| | Sbjct 1416218 ATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGTTTGACATTG 1416277 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | | |||| |||||||| || | || ||||| ||||| || || ||||| || Sbjct 1416278 TCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACG 1416337 Query 42198 AAGATTTGCATTTT 42211 || |||||||| || Sbjct 1416338 AAAATTTGCATGTT 1416351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 ||||| | || || | | ||| | ||||||||| | || |||||||| || |||| Sbjct 1415430 TTTATTGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGT 1415489 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 |||| | || ||| || | || || | |||||||| ||||| || | || ||||||| Sbjct 1415490 AATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGT 1415549 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 42153 | | || | | |||||||| || |||||||| | | | | | ||| | Sbjct 1415550 CAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATG 1415609 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || | || || || ||||| || | ||||| |||||||||||||| Sbjct 1415610 ATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || ||||||||||| ||||| || | || ||| || | Sbjct 1480902 ACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCC 1480961 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||||| || || | ||| || ||||||| || | | ||||| Sbjct 1480962 ATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTT 1481021 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| || |||||||| | | | | | ||| ||| |||||| || | || Sbjct 1481022 GTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCCACTTCCAGAGT 1481078 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || || ||||| |||||||||||||| Sbjct 1481079 AATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || |||||||| || |||||||||| ||||| || | Sbjct 1481130 ACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCC 1481189 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||||||||| || ||||| || || || |||| || | | ||||| Sbjct 1481190 ATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTT 1481249 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| || |||||||| | | | | | ||| ||| |||||| || | || Sbjct 1481250 GTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCT---TTCCACTTCCAATGT 1481306 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || | ||||| |||||||||||||| Sbjct 1481307 AATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212161724960