Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq67 145 8e-30 seq34 138 1e-27 seq2 114 1e-20 seq28 111 2e-19 seq56 93.3 4e-14 seq22 91.5 1e-13 seq8 91.5 1e-13 seq15 87.8 2e-12 >seq67 Length=1953875 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || ||||| ||||| |||||||| || | || ||||| | ||| Sbjct 1481590 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481649 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| || |||||| | ||||| || || |||||||||||||| ||||| || ||| Sbjct 1481650 TCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCT 1481709 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||||||||| ||| || | | || || |||||||| | || | |||| Sbjct 1481710 TGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1481769 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | ||||| |||||||||||||| || Sbjct 1481770 TTGCCAGTAAGGGTTTTAACGAAAATTTGCATGTT 1481804 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||| | |||||||| ||||| ||||||||||||| | || || | || Sbjct 1415452 AAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATC 1415511 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| ||||| |||| | || |||||||| |||||||| ||||| || || Sbjct 1415512 TTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC 1415571 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||||| || ||| || | | ||| | |||||||| | ||| | || Sbjct 1415572 TTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGT 1415631 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||||||| || || || |||||||| Sbjct 1415632 CTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| |||||||| |||||||||||||| || | | ||||| | || Sbjct 1480905 AAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATC 1480964 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || ||| | || | || || ||||||||||| || ||||| || || Sbjct 1480965 TTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTC 1481024 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||||| || ||| || | || ||| | |||||||| | ||| | || Sbjct 1481025 TTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGT 1481084 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| ||| || || || |||||||| Sbjct 1481085 CTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || ||||| |||||||||||||| || | | || || | ||| Sbjct 1416137 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCT 1416196 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| | ||||| || || ||||| |||||||| ||||| || ||| Sbjct 1416197 TCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCT 1416256 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||||| || ||| || | | || || |||||||| | || | |||| Sbjct 1416257 TGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1416316 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | ||| || |||||||||||||| || Sbjct 1416317 TTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||||| || ||||| ||||| ||||||||||| | | ||||| | ||| Sbjct 1481134 AGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1481193 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | ||||| || || || |||||||| || ||||| || ||| Sbjct 1481194 TCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCT 1481253 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||||| || ||| || | || ||| | |||||||| | || | ||| Sbjct 1481254 TGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTC 1481313 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || |||||||| Sbjct 1481314 TTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || ||||| |||||||||||||| || | || ||||| | ||| Sbjct 1481362 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481421 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || ||| |||| | || ||||| || |||||||| ||||| || ||| Sbjct 1481422 TCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 1481481 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||||| || ||| || | | ||| | |||||||| | || | ||| Sbjct 1481482 TGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTC 1481541 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || |||||||| Sbjct 1481542 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 >seq34 Length=2241197 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || ||||| |||||||||||||| || | | || | | || Sbjct 1642870 AAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATC 1642811 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| || || |||| || || || || || || ||||||||||| || || Sbjct 1642810 TTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTC 1642751 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||||||||| ||| || | || |||| | || ||||| | ||| | ||| Sbjct 1642750 TTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGT 1642691 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 ||||||||| | ||| || || ||||||||||| || |||| Sbjct 1642690 CTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTTGATAA 1642650 >seq2 Length=1684868 Score = 114 bits (126), Expect = 1e-20 Identities = 557/873 (64%), Gaps = 20/873 (2%) Strand=Plus/Minus Query 154592 CAAG-TTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAAT 154650 |||| |||||||| || ||| |||| ||| |||| ||||||||| | ||| | | Sbjct 855935 CAAGATTGCAAACAGCGGCTTCGTCAGGACTGGAATATTCCACAATTTCGGTGCAAAGGT 855876 Query 154651 TACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGT 154710 | |||||| ||||| |||||||||| ||| || |||||| ||| |||||||| |||| Sbjct 855875 TGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTGGATTTGCGGTTACATGCGTCCTTGT 855816 Query 154711 ACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGAC--T 154768 | || ||| | || |||| |||||| ||| | ||| | || | | | || | | Sbjct 855815 ATAACATGAATGGATTGCCGGTTTCCGTTTGAGCTTCCAAGATAG--CATACCATAACTT 855758 Query 154769 TCGCGCCTCAAC---TTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTT 154825 | | || | | || || || | ||| ||||| ||||| | ||| || || Sbjct 855757 TTGAGCTTTGATGGTTTCACGAGCA---CGACCTTCGCGTTCATACTTTTCATAGAGAGC 855701 Query 154826 TTCAAACTCTAAACTGTACACGTCCGACAAACCGGGA-CAGCGGTCGGGACACATCAATG 154884 ||| || || || | || || ||||| || | | | ||| || | || | Sbjct 855700 TTCGAATTCATCACCCCAGACCTCATGTAAACCAGGCGCCTCACTTGGG-CAAAACATGG 855642 Query 154885 ACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACA 154944 |||| |||| || || ||||||||||| | ||| || | ||||| ||| || | Sbjct 855641 ACCATTCGCCGTTGGCTTCAACACGTTTCATAAAGAGATCGGGAATCCACAGAGCATAAA 855582 Query 154945 ACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT-TCGCTTTAAATTCAAAAAATCA 155003 | | |||||| || | || || ||| | || | || | || |||||| | Sbjct 855581 AGAGATCACGAGCACGGATTTCGTCCTTGCCAACATTCTTGCGG-AGATCCAAAAAGGTA 855523 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTT---CCT 155060 | ||||| | ||||| || || | ||| | ||| | || || ||||| || Sbjct 855522 AAGATGTCAGGATGCCAAGGTTCAAGATACATGGCAAAGGCACCAGGACGTTTGTTACCA 855463 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTG 155120 ||||| || || | ||| | || ||| | || |||| || || | || || Sbjct 855462 CCTTGGTCGACATAACGGGCTGTGTTGTTGAAAACACGCAGCATAGGAAGAATACCATTG 855403 Query 155121 GCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACG 155180 | ||| || || ||| || || |||||| || || | || | Sbjct 855402 GAATAGCCATTTGTACCAGCAATGTAAGAACCCGTAGCACGAATATTGTGGATGTTGAGA 855343 Query 155181 CCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCC 155239 || | || || || || || || ||||| ||||| | | |||||| || || || Sbjct 855342 CCAATGCCACCTGCTGTCTTG-GAGATTTGGGCACACACTTTGAGAGTTTCATAGATGCC 855284 Query 155240 TTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCA 155299 | ||| ||||||||||| || | ||||||||| || || | ||| || |||| Sbjct 855283 CTCGATAGAGTCTTCTTTCATGGTGAGCAAGAAACAGGAGGACATTTGGGGACGAGGTGT 855224 Query 155300 GCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTA 155359 ||||| ||||| ||||| || || |||||||| | ||| | || | | |||||| Sbjct 855223 ACCGGCATTGAATAAAGTAGGGCTTGCATGTGTAAAGAATTTTTCGGACATAAGGTTGTA 855164 Query 155360 AGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCAT 155419 |||||| ||||| | ||| || || ||||| ||||| || ||||| ||||| | || Sbjct 855163 AGTTTCAATGGCAGAGTCGATATCTTCCCCGTGAATACCAATGGCCACACGCATAATCAA 855104 Query 155420 GTGTTGAATGCGCTCCGCAACGCGGCCGTTGAT 155452 |||||| || || || || ||| ||||| Sbjct 855103 ATGTTGAGGACGTTCTGCTACCTTGCCATTGAT 855071 >seq28 Length=432467 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 155199 TTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTC 155258 || || ||||| ||||| | | ||||||||| || |||| |||| |||||||||| Sbjct 233764 TTGGAAATTTGGGCACACACTTTGAGAGTTTCGTAGATACCTTCGATGGAGTCTTCTTTC 233705 Query 155259 AACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTA 155318 | || | ||||||||| || || | ||| ||| |||| ||| || ||||| ||| Sbjct 233704 ATGGTGAGCAAGAAACAGGAGGAGAGTTGGGGTCGAGGAGTGCCTGCGTTGAATAAGGTA 233645 Query 155319 GGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCA 155378 |||||||| || || || || | || | | |||||| ||||| || || | |||| Sbjct 233644 GGACTAGCATGGGTGAAGTACTTTTCGGACATGAGGTTGTAGGTTTCAATAGCAGAGTCA 233585 Query 155379 ATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTGAATGCGCTCCGCA 155438 || || ||| || || |||| ||||| ||||| | || |||||| || || || Sbjct 233584 ATATCTTCACCATGGATGCCGACGGCCACACGCATGATCAAATGTTGAGGACGTTCAGCC 233525 Query 155439 ACGCGGCCGTTGAT 155452 || ||| ||||| Sbjct 233524 ACTTTGCCATTGAT 233511 >seq56 Length=2073579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| |||||||| || | || || || | ||||| | ||| Sbjct 1295626 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTGC 1295567 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| | || |||||||| |||||||| ||||| || ||||| |||||| Sbjct 1295566 TTACCAGCGAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATTTTT 1295507 Query 64361 TGCTTTACA 64369 ||||| ||| Sbjct 1295506 TGCTTGACA 1295498 >seq22 Length=518773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | ||||| | ||||| | ||||| || Sbjct 75891 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGCTTACCA 75832 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || ||||| || |||||||| ||||| || ||||| ||||||||||| Sbjct 75831 GCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTG 75772 Query 64367 ACA 64369 ||| Sbjct 75771 ACA 75769 >seq8 Length=1007018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| |||||||| || | || || || | ||||| | ||| Sbjct 757513 TGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTGC 757572 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| | || |||||||| |||||||| ||||| || ||||| |||||| Sbjct 757573 TTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGGATTTTT 757632 Query 64361 TGCTTTAC 64368 ||||| || Sbjct 757633 TGCTTGAC 757640 >seq15 Length=645780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | ||| || | ||||| | ||||| || Sbjct 322239 GTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCTTCCAATTGCTTACCA 322298 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || ||||| || |||||||| ||||| || ||||| ||||||||||| Sbjct 322299 GCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTTTGCTTC 322358 Query 64367 ACA 64369 ||| Sbjct 322359 ACA 322361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644212917360