Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq28 109 5e-19 seq2 96.9 3e-15 seq17 82.4 8e-11 >seq28 Length=432467 Score = 109 bits (120), Expect = 5e-19 Identities = 280/425 (66%), Gaps = 6/425 (1%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || ||| | |||||||| || || || || || | || || |||||| || | || Sbjct 233643 CCTACCTTATTCAACGCAGGCACTCCTCGACCCCAACTCTCCTCCTGTTTCTTGCTCACC 233702 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | || | ||||||||| || || | ||| | ||||| | ||||| || || Sbjct 233703 ATGAAAGAAGACTCCATCGAAGGTATCTACGAAACTCTCAAAGTGTGTGCCCAAATTTCC 233762 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || || || ||| ||||| || | ||||||| || || |||||| Sbjct 233763 AAGACGGCAGGTGGCATTGGTCTCAACATCCACAACATTCGTGCCACAGGCTCTTACATC 233822 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 || ||||| ||| |||||| || | | |||||||| || ||||||||||| | Sbjct 233823 GCGGGAACCAACGGCTACTCCAATGGTATTCTTCCTATGCTTCGTGTCTTCAACAATACC 233882 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || || |||||||| || ||||| | | ||| |||| || | ||| | || Sbjct 233883 GCTCGTTACGTGGATCAAGGTGGCAACAAACGCCCTGGTGCTTTTGCTATGTATTTGGAA 233942 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || ||||| |||||| | | ||| | || || || ||||| ||||| ||| Sbjct 233943 CCTTGGCATGCGGACATCTTTACCTTCTTGGATCTTCGCAAGAATGTTGGCAAGGAT--- 233999 Query 94258 GAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | | || | || ||||| || || |||||| | || || || ||||||||||| Sbjct 234000 GAAATCCGTGCTCGTGATCTCTTTTATGCCCTCTGGATCCCTGATCTCTTTATGAAACGT 234059 Query 94315 GTCGA 94319 || || Sbjct 234060 GTGGA 234064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/298 (66%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 95075 AACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGA 95134 ||||||||||| ||| || | | ||||| || ||||| ||||| || || | || | Sbjct 234805 AACACGGTGTGCGCAACTCGTTATTGGTGGCACCTATGCCTACGGCATCGACATCTCAAA 234864 Query 95135 TCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGC 95194 | || || |||||| | |||||||| | ||||||||| | |||| | || |||| Sbjct 234865 TTCTGGGTTTCAACGAATGCTTCGAACCTTATACCTCCAACCTATACACACGTCGTGTGC 234924 Query 95195 TCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG 95254 | ||||| ||||||| || ||||| || || ||| || | ||||||| Sbjct 234925 TTGCCGGTGAATTCCAAATCGTCAACCCATGGCTGCTGAAGGATCTTGTGGAACTGGGTG 234984 Query 95255 TGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCC 95314 ||||| ||| | ||||||||| | | | | ||||| || ||||| || Sbjct 234985 TGTGGAATGAAGATATCAAGAACCGCATCATGTCTGATAGTGGCTCGGTACAGAATATTG 235044 Query 95315 CGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || || | | |||| || | ||||||||||| ||||| ||| |||| || Sbjct 235045 CGTCGATCCCTGCACATCTCAAAGCCATGTACAAGACCGTCTGGGAAATCTCGCAACG 235102 >seq2 Length=1684868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 95002 TTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGC 95061 || || | |||| | |||||||||| ||| || | | | || ||||| ||| | Sbjct 856292 TTGCAATACGACATGTGGGGTGTGACGCCTACGTCTTTATGGGATTGGGATGCTTTGAAG 856351 Query 95062 GCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCC 95121 ||| | ||| ||||||| || |||| | || |||||||| || |||||||| || Sbjct 856352 GCTAAAATTAGTCAACACGGCGTACGAAACTCTCTTCTTGTGGCACCTATGCCCACTGCG 856411 Query 95122 TCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTAC 95181 || ||| | || ||||| ||| ||||| | || ||||||| || |||||| |||| Sbjct 856412 TCAACGTCTCAAATCCTGGGCTTTAACGAATGCTTTGAACCCTATACGTCCAACTTGTAT 856471 Query 95182 AACAGGCGGGTGCTCGCCGGGGAATT 95207 | | || ||||||||||| ||||| Sbjct 856472 ACACGCCGTGTGCTCGCCGGTGAATT 856497 >seq17 Length=590484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 94066 GGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTC 94125 || |||||||| ||||||||||||||||||||||| | || ||||||||||| || Sbjct 158313 GGATCCTACATTGCTGGTACCAATGGCACCTCCAACGGTATTGTGCCTATGCTCCGTGTT 158254 Query 94126 TTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCG 94185 | |||| | | || || | || || ||||| || | ||||| || |||||| Sbjct 158253 TACAACGATACTGCACGATTTGTAACGCAAGGTGGCGGTAAAAGGAACGGCAGTTTCGCC 158194 Query 94186 GTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCAC 94245 | || ||||| || ||||| | ||| ||| | || | ||| |||| || || | Sbjct 158193 ATGTACCTCGAACCTTGGCATGTGGATGTGATTGACTTTTTGGACTTGCGCAAAAATTCC 158134 Query 94246 GGCAACGA 94253 ||||| || Sbjct 158133 GGCAAAGA 158126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722618700240