Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq67 131 2e-25 seq34 95.1 1e-14 seq2 86.0 6e-12 >seq67 Length=1953875 Score = 131 bits (144), Expect = 2e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| | |||||| || || | ||||||||| | | Sbjct 1416155 GATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTGTTTACCAGCA 1416214 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| |||||||| ||||| |||||||| || || |||||||||||| | | Sbjct 1416215 AAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATTTTTTGTTTGACA 1416274 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || ||||| || ||||| || | || | || || ||||| ||||| || Sbjct 1416275 TTG-TCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTT 1416333 Query 138600 TACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 1416334 GACGAAAATTTGCATG 1416349 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | ||| || || || | |||||||||| | Sbjct 1481608 GATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTACCGGCA 1481667 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| ||||| |||||||| ||||| ||||||||| || | Sbjct 1481668 AAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTCACA 1481727 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | || ||||| || ||||| || | || | || || ||||| || ||||| Sbjct 1481728 TTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGGGTTTTA 1481787 Query 138601 ACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 1481788 ACGAAAATTTGCATG 1481802 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||| | | | || |||||||||||||||||||| Sbjct 1480890 GCCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGA 1480949 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || | ||| ||||| | | |||| | || |||||||| ||||| Sbjct 1480950 CAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGG 1481009 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || |||||||| | |||| || | | ||| | |||| Sbjct 1481010 GATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTG-TCAATTGAGTCAGAGCTTTCCA 1481068 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||||||||| || ||||| || ||||| Sbjct 1481069 CTTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 >seq34 Length=2241197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| || || || |||| |||| ||||||||||| ||||| || Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||| || || | | |||| ||||| || || || ||||| Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| || |||||||| | | || | | ||| | || ||||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || || || ||||| || ||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 >seq2 Length=1684868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 169/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACT 154339 |||||||||||| || ||||||| ||| | || || || || | || || || Sbjct 855259 GAGCAAGAAACAGGAGGACATTTGGGGACGAGGTGTACCGGCATTGAATAAAGTAGGGCT 855200 Query 154340 CGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATC 154399 || || ||||| | ||||| | ||| | | ||| ||||| ||||| |||||||| Sbjct 855199 TGCATGTGTAAAGAATTTTTCGGACATAAGGTTGTAAGTTTCAATGGCAGAGTCGATATC 855140 Query 154400 ATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC--- 154456 || |||||||| || | || || ||||| | || || || |||||||| || || Sbjct 855139 TTCCCCGTGAATACCAATGGCCACACGCATAATCAAATGTTGAGGACGTTCTGCTACCTT 855080 Query 154457 TCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGTA 154516 | |||| || ||||| ||||| ||| | ||| ||| | || ||| | ||||| Sbjct 855079 GCCATTG---ATTTTCAAAAGATAGGAGCGTTCCAAGGTCTTGAATCCAAAAAAGTTGTA 855023 Query 154517 TTCAAAATC 154525 ||||||| Sbjct 855022 CCCAAAATC 855014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261816891680