Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq67 147 5e-30 seq34 123 6e-23 seq5 107 5e-18 seq22 104 6e-17 seq8 100 7e-16 seq56 98.7 2e-15 seq15 96.9 8e-15 >seq67 Length=1953875 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 1481590 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481649 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || ||||| ||||||||||| || ||||| ||| ||| ||||| || Sbjct 1481650 TCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCT 1481709 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||||||||||| |||| || ||| | | ||| || ||||| || || ||| Sbjct 1481710 TGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1481769 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || |||||||| Sbjct 1481770 TTGCCAGTAAGGGTTTTAACGAAAATTTG 1481798 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||||| |||||||||| |||||| || | |||||| Sbjct 1415444 CGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTA 1415503 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| |||||||| || | ||| |||||||| ||| ||| ||| Sbjct 1415504 CGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCT 1415563 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||||| || || |||| | ||| | || ||| || |||| Sbjct 1415564 TCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGA 1415623 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | ||| || ||||| ||||| Sbjct 1415624 GTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTG 1415661 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 1415681 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415740 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || | ||| ||||| || || ||| ||||| || Sbjct 1415741 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1415800 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||||||||| |||| | ||| | || ||| || |||| || || ||| Sbjct 1415801 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1415860 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| ||||| Sbjct 1415861 TTGCCAGTCAAAGTCTTGACAAAGATTTG 1415889 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 1415909 AGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1415968 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || | ||| ||||| || || ||| ||||| || Sbjct 1415969 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCT 1416028 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||||||||| |||| | ||| | || ||| || |||| || || ||| Sbjct 1416029 TGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTC 1416088 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || ||||| ||||| Sbjct 1416089 TTGCCAGTCAAAGTCTTGACAAAGATTTG 1416117 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||| | ||||||||||| | ||| | |||||| Sbjct 1416137 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCT 1416196 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || || || ||||||||||| || ||||| ||| ||| ||||| || Sbjct 1416197 TCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCT 1416256 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || ||||| || || || | || ||| | | ||| || ||||| || || ||| Sbjct 1416257 TGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1416316 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || |||||||| Sbjct 1416317 TTGCCAGTAAGAGTCTTGACGAAAATTTG 1416345 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || ||||| |||||||| | ||||||||| | |||||| Sbjct 1480897 CGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTG 1480956 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| || || ||||| | || || ||||| ||| || ||| Sbjct 1480957 CGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCT 1481016 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||||||||| ||||| || | | ||| | |||| || |||| Sbjct 1481017 TCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGA 1481076 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| |||||||| ||||| Sbjct 1481077 GTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTG 1481114 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || |||||||||| |||||| |||| | ||| | |||||||||| ||| Sbjct 1481143 TGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGC 1481202 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||||||||| || || || ||| || ||||| || ||||||||| Sbjct 1481203 TTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTT 1481262 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || ||||| || | | ||| | |||| || ||||| || || ||||| || || Sbjct 1481263 TGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTGCCAGTC 1481322 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || |||||||| ||||| Sbjct 1481323 AAGGTCTTCACAAAGATTTG 1481342 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||| | ||||||||||| | ||| | |||||| Sbjct 1481362 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1481421 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || || || || || || | ||| ||||| || ||| ||| ||||| || Sbjct 1481422 TCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 1481481 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||||| ||||| |||| | ||| | |||| || ||||| || || ||| Sbjct 1481482 TGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTC 1481541 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| ||||| Sbjct 1481542 TTGCCAGTCAAGGTCTTGACAAAGATTTG 1481570 >seq34 Length=2241197 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || || |||||||| | ||||||||| | ||||| Sbjct 1642878 CGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTT 1642819 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 ||||||||||| | |||||||| ||||| || || || || || || || ||||||| Sbjct 1642818 CTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCT 1642759 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| |||||||| || |||| | || | | |||||| |||| Sbjct 1642758 TCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGA 1642699 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||||||||| Sbjct 1642698 GTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTG 1642661 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | ||||| |||| || || | |||||||||| ||||| || Sbjct 1643082 GTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCA 1643023 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| ||||| ||||| || ||| || ||||| || ||||||||||| || Sbjct 1643022 GCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTG 1642963 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| | ||| | | ||| || ||||| || || || || || || || || Sbjct 1642962 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTC 1642903 Query 199613 TTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 1642902 TTGACAAAGATTTG 1642889 >seq5 Length=1173598 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 909366 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 909307 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | ||| ||||| || ||| ||| ||||| || Sbjct 909306 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 909247 Query 199538 TGAATCTTTTGCTTCAC 199554 |||||||||||||| || Sbjct 909246 TGAATCTTTTGCTTGAC 909230 >seq22 Length=518773 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || || |||||||||| ||||||||||| |||||| | |||||| Sbjct 75906 AGGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCT 75847 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || || || || | ||| ||||| || ||| ||| ||||| || Sbjct 75846 TCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCT 75787 Query 199538 TGAATCTTTTGCTTCAC 199554 || || |||||||| || Sbjct 75786 TGGATTTTTTGCTTGAC 75770 >seq8 Length=1007018 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || |||||||||| ||||||||||| | ||| | |||||| Sbjct 757504 AGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 757563 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | ||| |||||||| ||| ||| ||||| || Sbjct 757564 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT 757623 Query 199538 TGAATCTTTTGCTTCACG 199555 || || |||||||| ||| Sbjct 757624 TGGATTTTTTGCTTGACG 757641 >seq56 Length=2073579 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||||||||||| | ||| | |||||| Sbjct 1295635 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 1295576 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | || |||||||| ||| ||| ||||| || Sbjct 1295575 TCCAATTGCTTACCAGCGAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 1295516 Query 199538 TGAATCTTTTGCTTCAC 199554 || || |||||||| || Sbjct 1295515 TGGATTTTTTGCTTGAC 1295499 >seq15 Length=645780 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | |||||||| || |||||||||| ||||||||||| | || Sbjct 322215 CGAAGACGGAGAACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTA 322274 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||| || ||||| || | ||| ||||| || ||| ||| ||| Sbjct 322275 CGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCT 322334 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCAC 199554 || || || || ||||||||||| Sbjct 322335 TCCTTATCTTGGATTTTTTGCTTCAC 322360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920180136298