Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq67 102 9e-17 seq34 102 9e-17 >seq67 Length=1953875 Score = 102 bits (112), Expect = 9e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || | ||| || ||||| || Sbjct 1481611 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTACCGGCAAAG 1481670 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||||| || | | |||||||| ||| || | ||| | | Sbjct 1481671 ATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTCACATTA 1481730 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | |||| |||||||| |||| || ||||| ||||| || || |||||||| Sbjct 1481731 TCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGTAAGGGTTTTAACG 1481790 Query 46583 AAGATTTGCATTTT 46596 || |||||||| || Sbjct 1481791 AAAATTTGCATGTT 1481804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||| | ||||| ||| | || ||||||||||| ||||| Sbjct 1415431 TTATTGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTA 1415490 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || | ||| || | || || | ||||| |||||||| ||||| || |||||||| Sbjct 1415491 ATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTC 1415550 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | |||||||| ||||| || || | | | | | | | ||| | Sbjct 1415551 AGGAGGAATACCTTCCTTGTCTTGAATCTT-TTGTTTAACATTGTCGATAGAGTCAGATG 1415609 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| |||| || || || ||||| |||| || || |||||||||||||| Sbjct 1415610 ATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || | ||||| || || || Sbjct 1415702 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAA 1415761 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| |||| || | | ||||| || ||||| | ||| | | Sbjct 1415762 ATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGAATCTTTTGCTTCACATTG 1415821 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||||| |||| || || || ||||| |||| || || ||| Sbjct 1415822 TCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACA 1415881 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1415882 AAGATTTGCAT 1415892 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || |||||||| | || || | ||||| || || || Sbjct 1415930 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAA 1415989 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| |||| || | | ||||| || ||||| | ||| | | Sbjct 1415990 ATCAAACGTTGCTGATCGGGGGGAATACCTTCCTTATCTTGAATCTTTTGCTTCACATTG 1416049 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | ||| |||||||| |||| || || || ||||| |||| || || ||| Sbjct 1416050 TCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACA 1416109 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1416110 AAGATTTGCAT 1416120 >seq34 Length=2241197 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| || ||| || |||| || ||||| |||||||| |||||||| || ||| Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || ||| | || || | ||||| || || || |||| || ||||| |||| || Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | | |||||||| ||||| | |||| ||| | | | | ||| |||||||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGA-CGTTGTCGATAGAGTCAGAGGATTCCAC 1642934 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || |||||||| || || || || |||||||||||||| Sbjct 1642933 TTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237735844880