Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq67 145 8e-30 seq34 86.0 6e-12 seq56 84.2 2e-11 >seq67 Length=1953875 Score = 145 bits (160), Expect = 8e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| |||||||| ||||| ||||| || || ||||| ||||| ||| | || || || | Sbjct 1481805 AAACATGCAAATTTTCGTTAAAACCCTTACTGGCAAGACCATTACCTTGGAAGTGGAATC 1481746 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | | | || ||||||||| ||||| || || ||||| |||| Sbjct 1481745 CTCCGACTCCATCGATAATGTGAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCCGA 1481686 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || ||||| | || || |||||| |||| || | ||||| ||| ||||| Sbjct 1481685 CCAACAACGTCTCATCTTTGCCGGTAAACAGTTGGAAGATGGCCGCACTCTCTCTGACTA 1481626 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||| | || || || |||||||| ||| Sbjct 1481625 CAACATCCAAAAGGAATCTACTCTTCACTTGGTGCTCCGT 1481586 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || || ||||| ||||| ||| | || || || || Sbjct 1416351 AACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAATCC 1416292 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||||| | | | | | ||| ||||||||| || || || || ||||| | ||| Sbjct 1416291 TCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCAGAC 1416232 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || ||||| | || || ||||| |||| || | || || || |||||| Sbjct 1416231 CAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGACTAC 1416172 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||||||| | || || || |||||||| ||| Sbjct 1416171 AACATTCAAAAGGAATCTACTCTTCACTTGGTGCTCCGT 1416133 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 ||||| |||| || | ||||| || || ||||| | ||||| || || | |||| || Sbjct 1415588 TTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATTTTCG 1415529 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | || || || |||| || | || || | || |||||||||||||||||| ||| Sbjct 1415528 CCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACAACATCCAAAAGGAATCGA 1415469 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 | || ||||||||||| ||| Sbjct 1415468 CTCTCCATTTGGTGCTTCGT 1415449 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 ||| |||| || | ||||| || || || || |||| ||||| || ||||| | || Sbjct 1481267 AAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAACAACGTCTCATCTTTGCT 1481208 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || || || |||| || | ||||| || || |||||||||||||||||| | || Sbjct 1481207 GGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAAAAGGAATCTACT 1481148 Query 38442 CTGCATTTGGTGCTGCGT 38459 || ||||||||||| ||| Sbjct 1481147 CTTCATTTGGTGCTCCGT 1481130 >seq34 Length=2241197 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 |||| || |||||||| || || || || || || ||||| ||||| || | || || Sbjct 1642649 TTTATCAACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTA 1642708 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTA----AAG-AAAAAATCCTCGACAAAGAGGGAA 38349 || | | || | ||| || | | ||| ||||||| | ||||| || |||| Sbjct 1642709 GAATCTTCTGA-----TTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAA 1642763 Query 38350 TTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||| | || ||||| || || |||| ||| || || || | || || | | || Sbjct 1642764 TTCCCCCTGATCAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTT 1642823 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | ||||||||||| ||||||||| | || || ||||||||||| ||| Sbjct 1642824 TATCGGACTACAACATTCAAAAGGAATCTACACTTCATTTGGTGCTTCGT 1642873 >seq56 Length=2073579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 ||||||||| ||||| || || ||||| | ||||| || || | |||| ||| || | Sbjct 1295506 AAAAAATCCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGCTTGATTTTCGCTGGTA 1295565 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || |||| || | || || ||| ||||||||||||||||||||| | || || | Sbjct 1295566 AGCAATTGGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATCCACTCTTC 1295625 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 1295626 ACTTGGTCCTCCGT 1295639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172212296960