Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq67 179 8e-40 seq34 159 8e-34 seq56 136 9e-27 seq8 127 5e-24 seq5 127 5e-24 seq15 120 7e-22 seq22 109 1e-18 seq2 91.5 3e-13 >seq67 Length=1953875 Score = 179 bits (198), Expect = 8e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || |||||||| ||||| || | |||||| | |||||||| | || Sbjct 1416145 GTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAATTG 1416204 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| || |||||||||||||||||||| ||||| || ||||| ||||| Sbjct 1416205 TTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATTTT 1416264 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || ||||||| ||| || ||||||||| | ||||| ||||| || || Sbjct 1416265 TTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGT 1416324 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 1416325 AAGAGTCTTGACGAAAATTTGCAT 1416348 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || ||||| || | ||||| | |||||||| | ||| Sbjct 1481598 GTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAACTG 1481657 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| || ||||||||||| |||||||| ||||| |||||||| ||||| Sbjct 1481658 TTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCTTGGATTTT 1481717 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || || |||| ||| || ||||||||| | ||||| ||||| || || Sbjct 1481718 TTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTCTTGCCAGT 1481777 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 1481778 AAGGGTTTTAACGAAAATTTGCAT 1481801 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || || ||||| || |||||||| | |||||| | |||||||| | ||| Sbjct 1481143 TGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAATTGC 1481202 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || |||||||| || ||||| || ||||| ||||||||||| ||| Sbjct 1481203 TTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTT 1481262 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || ||||| | ||| || ||||||||||| | |||| ||||| || ||| Sbjct 1481263 TGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTGCCAGTC 1481322 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | |||||| Sbjct 1481323 AAGGTCTTCACAAAGATTTGCAT 1481345 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || |||||||| ||||| || | | ||| | |||||||| | ||| Sbjct 1480915 TGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCCATCTTCCAATTGC 1480974 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | |||||||||||| ||||| || ||||| ||||||||||| ||| Sbjct 1480975 TTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTTGTCTTGAATCTTT 1481034 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || ||||| | ||| || ||||||||||| || |||| ||||| || ||| Sbjct 1481035 TGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAATAGTCTTGCCAGTC 1481094 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | |||||| Sbjct 1481095 AGAGTCTTCACAAAGATTTGCAT 1481117 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || ||||| || |||||||| | | ||| | |||||||| | ||| Sbjct 1415462 TGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTCCAATTGC 1415521 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || | ||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 1415522 TTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 1415581 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || || || | ||| || ||||||||| || |||| ||||| || ||| Sbjct 1415582 TGTTTAACATTGTCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTC 1415641 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || | |||||| Sbjct 1415642 AAAGTCTTGACAAAGATTTGCAT 1415664 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || |||||||| ||||| || | ||||| | |||||||| | || Sbjct 1481370 GTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAATTG 1481429 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || || || | ||||| || || |||||||| ||||| ||||||||||| || Sbjct 1481430 TTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTT 1481489 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || || || | ||| || ||||||||||| | |||| ||||| || || Sbjct 1481490 TTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAATAGTCTTGCCAGT 1481549 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || || | |||||| Sbjct 1481550 CAAGGTCTTGACAAAGATTTGCAT 1481573 >seq34 Length=2241197 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || || || |||||||| ||||| || | | |||||| |||||||| | ||| Sbjct 1642860 TGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCTTCTAATTGC 1642801 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct 1642800 TTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCTTGAATTTTT 1642741 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || || || | || ||| ||| ||||| || |||| ||||| || || Sbjct 1642740 TGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTCTTGCCGGTA 1642681 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | |||||| Sbjct 1642680 AGAGTCTTAACAAAAATTTGCAT 1642658 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||||||||||||||| | | || | ||||||||| | ||||| || Sbjct 1643082 GTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCA 1643023 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || ||||| || || ||||| || ||||| ||||||||||| ||||| ||| Sbjct 1643022 GCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTTG 1642963 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || | ||| || ||||||||| | |||| || || ||||| | || Sbjct 1642962 ACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTC 1642903 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 1642902 TTGACAAAGATTTGCAT 1642886 >seq56 Length=2073579 Score = 136 bits (150), Expect = 9e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| || | ||||| | |||||||| | || Sbjct 1295627 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTG 1295568 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | ||||| ||||| |||||||| ||||| |||||||| ||||| Sbjct 1295567 CTTACCAGCGAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGGATTTT 1295508 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||||||||| || ||||| | ||| || || Sbjct 1295507 TTGCTTGACATTGTCAATAGAGTCAGAGCT 1295478 >seq8 Length=1007018 Score = 127 bits (140), Expect = 5e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| || ||||| || ||||| || | ||||| | |||||||| | || Sbjct 757512 GTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTG 757571 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | ||||| ||||| |||||||| ||||| || ||||| ||||| Sbjct 757572 CTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGGATTTT 757631 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 |||||||||||| || || | ||| || || Sbjct 757632 TTGCTTGACGTTGTCGATAGAGTCAGAGCT 757661 >seq5 Length=1173598 Score = 127 bits (140), Expect = 5e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| || | ||||| | |||||||| | || Sbjct 909358 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCCAATTG 909299 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || | ||||| || || |||||||| ||||| ||||||||||| || Sbjct 909298 CTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTT 909239 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||||||||| || || || | ||| || || Sbjct 909238 TTGCTTGACATTGTCGATCGAGTCAGAGCT 909209 >seq15 Length=645780 Score = 120 bits (132), Expect = 7e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || ||||| || ||||| || | ||| || | |||||||| | ||| Sbjct 322233 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCTTCCAATTGC 322292 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || | ||||| || || |||||||| ||||| || ||||| |||||| Sbjct 322293 TTACCAGCGAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTATCTTGGATTTTT 322352 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||||| || || ||||||| ||| || || Sbjct 322353 TGCTTCACATTGTCAATGGAGTCGGAGCT 322381 >seq22 Length=518773 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || ||||| || ||||| || | | ||| | |||||||| | || Sbjct 75898 GTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTG 75839 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 75838 CTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATTTT 75779 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||||||||| || || || | ||| || || Sbjct 75778 TTGCTTGACATTGTCGATAGAGTCAGAGCT 75749 >seq2 Length=1684868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 110/146 (75%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 161823 AAAGAACCAACTTGCGCCATCGTCCAATTGGTCTTGGAGTTCAGGGACTTGCCGATGTGT 161882 ||||| | |||||||| ||||| || |||||||| || || || || ||||| |||| | Sbjct 856071 AAAGATCGAACTTGCGACATCGCCCTATTGGTCTAGGTGTACAAGGCCTTGCTGATGCAT 856130 Query 161883 T--TGCAATTATGGGTCTTTCGTGGCTCGAT--GAAGAAGCAAAGATGCTGAACAGACAA 161938 | ||| ||||| || | | | | || || ||||| || |||||||||| |||| Sbjct 856131 TCATGC--TTATGCGTTATCCCTT--TGAATCCGATGAAGCCAAAATGCTGAACAAACAA 856186 Query 161939 ATCTTTGAAACAATCTATCACGCAGC 161964 ||||||||||||||||| || || || Sbjct 856187 ATCTTTGAAACAATCTACCATGCCGC 856212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480263768098