Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 98.7 2e-15 seq4 93.3 8e-14 seq1 87.8 3e-12 >seq28 Length=432467 Score = 98.7 bits (108), Expect = 2e-15 Identities = 324/497 (65%), Gaps = 15/497 (3%) Strand=Plus/Minus Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 ||||| ||||||||||| || || || || | | | || | | ||| |||||||| Sbjct 234379 CTGGCAAGGTTACACACAGCGACTTCATCAGGGCTAGAGTATTCGACGATTTCTGTACAA 234320 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 || || ||||| |||||||| |||| || | ||||| || || || ||| ||| ||| Sbjct 234319 AGATTACTGCATTTGATGGTGCCCAAGTTTTGTTGATTTGATTTCCGGTTGCAAGCATCC 234260 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 |||||||||||||| || ||||| ||| ||||| |||| || | ||| | | Sbjct 234259 TTGTAGAGCATAAAAGGGTTCCCAGTTTCCGTTTGAGCTTCCAGGATAGCATACCACAAT 234200 Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTT----TTCATACCCGGTAT 221945 | |||| || ||| || || | | | | ||| ||| ||| || || Sbjct 234199 T-TCTGCGCCTTCATGGT----TTCA---CGCGCACGGCCTTCCCGTTCGTATTTTTCAT 234148 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC-GGGACAC 222004 ||||| ||||| | || || | | || | || || | | | | | ||||| Sbjct 234147 AGAGCTGTTCAAATTCGTCTCCCCAAACATCTTGGAGCCCACG-CGCTTCACTTGGACAA 234089 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 | || ||||| || ||| || | | ||| ||||| || |||||||| || Sbjct 234088 AACAAGGACCAGTCGCCATTCGCTTCCACACGTTTCATAAAGAGATCAGGGATCCAGAGG 234029 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | ||||||||| | | || || ||| ||| || || | |||||||| Sbjct 234028 GCATAAAAGAGATCACGAGCACGGATTTCATCCTTGCCAACATTCTTGCGAAGATCCAAG 233969 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 || ||| ||||| || ||||| || |||| ||| | || | ||| || || || ||| Sbjct 233968 AAGGTAAAGATGTCCGCATGCCAAGGTTCCAAATACATAGCAAAAGCACCAGGGCGTTTG 233909 Query 222185 TTGCCACCCTGATCCAC 222201 |||||||| |||||||| Sbjct 233908 TTGCCACCTTGATCCAC 233892 >seq4 Length=1266665 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| || || || || || || ||||||||||| |||||||| || |||| | ||| Sbjct 714724 TTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGCCTTT 714783 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || | ||||||||||||||| | || ||||| ||| || || ||||| || Sbjct 714784 GCCTCTATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAATGAA 714843 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 || ||||| | ||||| |||||||| | || ||||| ||||| Sbjct 714844 CTGATCAGTCGTGACGAAGGTCTCCATACTGACTTTGCATGCCT 714887 >seq1 Length=3895514 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| || || || || ||||||||||||||||| || ||||| ||| ||| | ||| Sbjct 3274587 TTTGCTGAACGTCTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTT 3274646 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||||||||| | || ||||| || || ||| ||||| || Sbjct 3274647 GCCTCCATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAA 3274706 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTG 26030 | ||| | | ||||| ||||| |||| || ||||| || Sbjct 3274707 TTGATCTGTCGTGACGAAGGTCTTCACACTGACTTTGCTTG 3274747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843708607360