Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5 224 1e-53 seq18 221 2e-52 >seq5 Length=1173598 Score = 224 bits (248), Expect = 1e-53 Identities = 369/524 (70%), Gaps = 6/524 (1%) Strand=Plus/Plus Query 47800 ACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTG 47859 ||||| || ||||||| |||||||| | ||| ||||||||| | |||||||| || | Sbjct 869850 ACAAAGTCTTCAGGTTGGTCTTGTTGCAACATCAACCACATACCTTCGACATAGTCCCGA 869909 Query 47860 GCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCT 47919 ||||| ||||||||||| |||||||| || || | || || || ||||| || Sbjct 869910 GCATGACCCCAGTCACGCTTTGCATCAATGTTACCCAAGTACAAGCATTCTTGACGGCCC 869969 Query 47920 TCAGAGATTGCTTTTAATGCTCTTGTA-ATCTTACGAGTTACAAAAGTTTCACCACGTCT 47978 | ||| | | || |||| | |||||||| ||||| || || |||||| | Sbjct 869970 AAATGGATATCAGCCACAGC-CTTGGAGATCTTACGGGTTACGAAGGTGCGACCACGACG 870028 Query 47979 TGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATA 48038 |||||||| ||||| || || ||||| |||| |||||||| ||| ||||||||||| Sbjct 870029 AGGAGATTCGTGATTGAAGAGGATACCGTTACAAGCATACATGTTGTAGGATTCACGATA 870088 Query 48039 GTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAA 48098 ||| || |||||||| || ||||| || || |||||||||||||| || || ||||| Sbjct 870089 GTTGACCACGATCCAGTAACCGTAGAGCTTGGCCACACCATAAGGAGAGCGAGGGTAGAA 870148 Query 48099 AGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGC 48158 || ||||| || | || ||||| || ||||||||||| | |||| |||||| || Sbjct 870149 GGGAGTGGTTTCCTTTTGAGGAGTTTCGACAACCTTACCATATAATTCAGAGGTGGAGGC 870208 Query 48159 TTGATAGATACGAACCCTATC-TTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCA 48217 |||||||| || || | || || ||| || |||| || || | | | || Sbjct 870209 TTGATAGAAGCGCACACGTTCAGTCAATC-CACAGGTGCGGATAGCATCCAATAAACGCA 870267 Query 48218 GGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACAT 48277 ||| || | ||||| | |||||| || || | ||| ||||| || ||||| || | Sbjct 870268 AGGTACCAAGAGCATCCACATCACCAGTGTATTCAGACATATCAAAGGACACCTTGACGT 870327 Query 48278 GACTCTGTGC-CCCAAGATTATAAATCTCATCTGGTTGAACCTG 48320 | || || |||||| || || || ||| ||||| || || Sbjct 870328 GTGATTGAGCACCCAAG-TTGTAGATTTCAGTAGGTTGGACTTG 870370 >seq18 Length=557977 Score = 221 bits (244), Expect = 2e-52 Identities = 530/795 (67%), Gaps = 15/795 (2%) Strand=Plus/Plus Query 47583 CCAACCCAATTTTTTCTTTGCCTTAGAGGCATCACCTAATAAGGTCTCTACTTCAGCAGG 47642 ||| ||||| |||| ||| ||||| | | ||||| || | || ||||| ||||| Sbjct 111667 CCAGCCCAACTTTTCCTTAGCCTTGGTAGGGTCACCCAACAGCAATTCGACTTCGGCAGG 111726 Query 47643 ACGGAAATATTTAGAGTCAATTCTGATAACCGTTTTACCA---TCAGAATCAATACCAAC 47699 |||||| ||||| | || || | || | | || ||| |||| ||| |||| | Sbjct 111727 ACGGAAGTATTTGGGATCGATACGGACACGGATCTTTCCAGTTTCAGCATCTTTACCGAT 111786 Query 47700 TTCATCAAGACCAGAACCTTCCCATCTAATATTCATATCAAAATAAGGTGCAGATTCCTC 47759 ||||| | ||| ||||||||| | || || | || || || | ||| Sbjct 111787 TTCATTCACACCTTCACCTTCCCAGATGATCTTGCGACCAGTCACAG---CAAAGGCCTT 111843 Query 47760 AACAAACTGA---CGGACAGAATATTGATTTC--CTGTGGCAATAACAAAATCATCAGGT 47814 ||| | | ||||||| | | |||| | || || | ||||| ||||||||| Sbjct 111844 TTCAATATAAGATCGGACAG--TGTGAGTTTCACCAGTAGCCAATACAAAGTCATCAGGT 111901 Query 47815 TCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCA 47874 | |||||||| ||||| ||||||||| | || || ||||| ||||||| ||||| ||| Sbjct 111902 TGGTCTTGTTGCAGCATCAACCACATACCTTCAACGTAATCCTTGGCATGACCCCAATCA 111961 Query 47875 CGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT 47934 || |||||||| || || || || | ||| ||||| || ||| | Sbjct 111962 CGCTTTGCATCAATGTTACCGAGGTACAGACATTCTTGACGGCCCAAGTGGATATCGGCG 112021 Query 47935 AATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTA 47994 | || | | ||||| || || ||||| || || || | |||||||| || || Sbjct 112022 ACAGCACGGGAGATCTTGCGGGTCACAAAGGTACGGCCTCGGCGGGGAGATTCGTGGTTG 112081 Query 47995 AAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAG 48054 || |||||||| ||||||||||||| ||| ||||||||||| || || |||||| Sbjct 112082 AAGAGAATACCGTTACAGGCATACATGTTGTAGGATTCACGATAATTGACCACAATCCAG 112141 Query 48055 TACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTC 48114 || |||||||| || || |||||||| || ||||| |||||||| || ||||| || | Sbjct 112142 TAACCATAGAGCTTAGCCACACCATAGGGGGAACGGGGATAGAAGGGCGTGGTTTCCTTT 112201 Query 48115 TGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACC 48174 || || || || |||||||| || | ||| |||||| ||||| |||| ||| || Sbjct 112202 TGAGGGGTTTCAACGACCTTACCGTACAATTCCGAGGTGGAGGCTTGGTAGAAACGGACG 112261 Query 48175 CTATC-TTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATC 48233 | ||| || ||| || ||||| || || | | | || || || | ||||| Sbjct 112262 CGATCAGTCAATC-CACAGGTACGGATAGCATCTAATAAACGGAGAGTACCGAGAGCATC 112320 Query 48234 TGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAG 48293 | |||||| || || | ||| ||||| || ||||| || ||| || || |||| Sbjct 112321 CACATCACCAGTGTATTCAGACATATCAAAGGACACCTTGACGTGAGATTGGGCAGCAAG 112380 Query 48294 ATTATAAATCTCATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGT 48353 ||| || | ||| ||||| || || |||| || ||| |||||||| || Sbjct 112381 ATTGTACACTTCAGTAGGTTGCACTTGGGAGATAATGTGGACCAAACAGGTAGAGTCAGT 112440 Query 48354 TAAGTCTCCATAATG 48368 || || |||| ||| Sbjct 112441 CAAATCACCATGATG 112455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493618044080