Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq34 143 5e-29 seq67 87.8 3e-12 >seq34 Length=2241197 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| ||| | ||||| || || ||| || Sbjct 1642893 ATTTGCATACCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTG 1642834 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| ||||| ||| |||||||| ||||| || ||||| | || |||||| Sbjct 1642833 TAGTCCGATAAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGA 1642774 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || ||||| ||||| || | ||| || | ||| ||| Sbjct 1642773 TCAGGGGGAATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAA 1642714 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| ||||| || || || || || || || || ||||| |||||||| || Sbjct 1642713 GATTCTACTTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 >seq67 Length=1953875 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| || | |||| || || ||| || Sbjct 1481338 ATTTGCATACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTG 1481397 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| ||||||||||| || |||||||| || | || ||| Sbjct 1481398 TAGTCAGAGAGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGA 1481457 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| || || ||| | ||| |||| || || Sbjct 1481458 TCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAG 1481517 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | || ||||| || || || | || || ||||| |||||||| Sbjct 1481518 CTTTCCACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653342906080