Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq67 120 4e-22 seq34 104 3e-17 seq1 95.1 2e-14 >seq67 Length=1953875 Score = 120 bits (132), Expect = 4e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || |||||||| | ||||| ||| ||| Sbjct 1415664 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415605 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| || || ||| | || || ||||| || ||||| || ||||| || || Sbjct 1415604 GACTCTATCGACAATGTTAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 1415545 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||||||||||| | |||||| | | ||||| |||||||| | Sbjct 1415544 CAACGTTTGATTTTCGCCGGTAAGCAATTGGAAGATGGCCGTACTTTGTCAGATTACA-- 1415487 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| || |||| || ||||| ||| Sbjct 1415486 ACATCCAAAAGGAATCGACTCTCCATTTGGTG 1415455 Score = 116 bits (128), Expect = 5e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || ||||||||||| ||||| ||| ||| Sbjct 1481345 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481286 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| || |||||| | || || ||||| || ||||| || ||||| || ||| Sbjct 1481285 GACTCAATTGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAA 1481226 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| |||||||| | |||||| | | ||| | || ||||| | Sbjct 1481225 CAACGTCTCATCTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTTTCTGATTACA-- 1481168 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| || | || |||||||| ||| Sbjct 1481167 ACATCCAAAAGGAATCTACTCTTCATTTGGTG 1481136 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || ||||||||||| ||||| ||| ||| Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| || |||||| | || || ||||| || ||||| || ||||| || || Sbjct 1481513 GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1481454 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| ||||| || | |||||| | | ||| | || || || || Sbjct 1481453 CAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAAC 1481394 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| || | || ||||| || ||| Sbjct 1481393 AT-TCAAAAGGAATCTACTCTTCACTTGGTG 1481364 >seq34 Length=2241197 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| |||| || | || || || || ||||| | ||||| ||| | Sbjct 1642655 AACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCT 1642714 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| || || || || | ||||| ||||| || ||||| || || || || Sbjct 1642715 TCTGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGAT 1642774 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| || |||||| || || ||||| | |||||| ||||||||||| || || Sbjct 1642775 CAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTAC 1642834 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || || ||| || | || |||||||| ||| Sbjct 1642835 AACAT-TCAAAAGGAATCTACACTTCATTTGGTG 1642867 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||||||||| || ||||| ||| ||| Sbjct 1642886 ATGCAAATCTTTGTCAAGACCCTTACAGGCAAAACTATTACTTTGGAAGTGGAATCCTCT 1642945 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||||| ||| | || || ||||| || ||||| || ||||| || || Sbjct 1642946 GACTCTATCGACAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCTCCCGATCAG 1643005 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| || ||||| | |||||| | || ||||| ||||| ||| Sbjct 1643006 CAACGTCTGATCTTTGCTGGGAAGCAATTGGAAGATGGGCGTACCTTATCTGATTACAAT 1643065 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||| || | || | || || || ||| | || |||| |||| Sbjct 1643066 AT-TCAAAAGGAATCAACATTACACTTGGTATTACGTCTACGAGGTGGTG 1643114 >seq1 Length=3895514 Score = 95.1 bits (104), Expect = 2e-14 Identities = 216/319 (68%), Gaps = 7/319 (2%) Strand=Plus/Minus Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || || |||| |||||| | |||||||| | || || ||||||||||| || || Sbjct 3274388 TCAATGGCATCAAACAAGTTTTCTTTTTCAACAGGGTCCTTGATATAAGTGTCAATCAAT 3274329 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 ||| ||| |||||| ||| || |||| || || || || | |||||| || | Sbjct 3274328 AAACTATAAGTTTCAGCATGAATATTTTCAATCATGATTTGGAATCCATAAAAGCATTTG 3274269 Query 18506 GCCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564 || || | ||| |||| | | ||||| | ||| ||||| || || || || ||||| Sbjct 3274268 GCTTCAGCGATCTTGACTTCATCCATAAAGT-TTTGCACCAAGTTTTCGTTGACAATACC 3274210 Query 18565 GTCAGCAGAT-GCGAAAAATGCCAAAACAT---ATTTAATGAAATGTTTTTCATTATCCT 18620 || | || | || || || ||||| |||| | ||| |||| ||| || || | | Sbjct 3274209 ATCCG-AGCTAGCAAAGAAAGCCAACACATGAGAGATAAAGAAACGTTCGTCGTTGTTCA 3274151 Query 18621 TGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAG 18680 | || | ||| |||| |||| || || || |||| |||||| | ||||| |||| Sbjct 3274150 TTTTGTTTTCCCAGTCATTAGTATCCTTGGAGAGGTCAATTTCTTCAGCAGTCCAGAAAG 3274091 Query 18681 ATGATTCGGCCTGTTTGTA 18699 | | |||| || |||||| Sbjct 3274090 AAGCTTCGTGCTTTTTGTA 3274072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871140050400