Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq34 158 2e-33 seq67 131 3e-25 seq22 87.8 4e-12 >seq34 Length=2241197 Score = 158 bits (174), Expect = 2e-33 Identities = 183/244 (75%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | |||||| | || ||||| | |||| || ||| || || || || || Sbjct 1642887 ATACCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGA-ATGTTGTAGTC 1642829 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||| |||| | |||| || ||||| || ||||| || || | || ||||||||||| Sbjct 1642828 CGATAAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGG 1642769 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| || ||||| ||||| | || |||||| || ||||| || ||||| Sbjct 1642768 GGGAATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTC 1642709 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGA 192545 |||||| ||||||||||| || || || | || |||| ||| || ||||| || || | Sbjct 1642708 TACTTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTTGATAAA 1642649 Query 192546 AAAA 192549 |||| Sbjct 1642648 AAAA 1642645 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||||| ||||||||||| || ||||| || | || ||| || ||||| ||||||| Sbjct 1643113 ACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGA-ATATTGTAATCAG 1643055 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 |||| || || |||| |||||||| || ||||||||||| | | || ||||| || | Sbjct 1643054 ATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAG 1642995 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||| || ||||| || || | ||| || || ||||| || || ||||| | Sbjct 1642994 GGATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCA 1642935 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| | |||||| ||||| || || | || || | ||| || ||||| Sbjct 1642934 CTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 >seq67 Length=1953875 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | ||||| || || ||| || || ||| Sbjct 1415663 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 1415722 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||| ||||||||||| || || | || ||||| || Sbjct 1415723 GAGAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGG 1415782 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || | || ||||| ||||| || || ||||| Sbjct 1415783 GGAATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCC 1415842 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || ||||| || || || | ||| || ||||| Sbjct 1415843 ACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415892 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | ||||| || || ||| || || ||| Sbjct 1415891 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 1415950 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||| ||||||||||| || || | || ||||| || Sbjct 1415951 GAGAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGG 1416010 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || | || ||||| ||||| || || ||||| Sbjct 1416011 GGAATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCC 1416070 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||| || || ||||| || || || | ||| || ||||| Sbjct 1416071 ACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1416120 Score = 127 bits (140), Expect = 4e-24 Identities = 170/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || || || | ||||| || ||| || || || || || Sbjct 1416119 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 1416177 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | || || |||| ||||||||||||||||||||||| | | ||||| || || Sbjct 1416178 AGAAAGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGG 1416237 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| |||||||| ||||| | ||| ||||| || || || || ||||| Sbjct 1416238 AGGAATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTC 1416297 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||||| || ||||| | || || | || || ||||| || Sbjct 1416298 CACTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTT 1416351 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| | ||||| || || ||| || |||||| Sbjct 1481116 ATACCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCA 1481175 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||||||| |||||||||||||| | | |||||||| || Sbjct 1481176 GAAAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGA 1481235 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || | ||| ||||| || || || || ||| Sbjct 1481236 GGGATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCC 1481295 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| || || || | ||| || ||||| Sbjct 1481296 ACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 116 bits (128), Expect = 7e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | |||||| | || ||||| | || | || ||| || || || || || || Sbjct 1480891 CCACCACGAAGACGAAGCACCAAATGAAGGGTCGATTCCTTTTGA-ATGTTGTAGTCCGA 1480949 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| |||||||||||||| |||| ||||| || || || Sbjct 1480950 CAAAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGG 1481009 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || || | ||| ||||| || || || || ||| || Sbjct 1481010 GATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCAC 1481069 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| |||||||| || || ||||| | || || | ||| || ||||| Sbjct 1481070 TTCCAGAGTAATAGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || || || | ||||| || ||| || || || || || Sbjct 1481344 ATACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 1481402 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | || || |||| || ||||||||||||||||| || || | || |||||||| Sbjct 1481403 AGAGAGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGG 1481462 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || || | ||| ||||| ||||| || || ||| Sbjct 1481463 AGGAATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTC 1481522 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || ||||| || || || | ||| || ||||| Sbjct 1481523 CACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 >seq22 Length=518773 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 || |||||||| | ||||| | || || || | || | || || ||| || || Sbjct 75927 ATGATACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAG 75868 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || || |||| |||||||| ||||||||||| || || | || |||||| Sbjct 75867 TCAGACAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCA 75808 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || || || ||||| || ||||| ||||| | || ||||| Sbjct 75807 GGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTTGACATT 75767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478814316900