Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq28 156 1e-32 seq2 143 8e-29 seq67 114 4e-20 seq23 104 7e-17 seq17 98.7 3e-15 seq1 96.9 1e-14 seq8 84.2 6e-11 >seq28 Length=432467 Score = 156 bits (172), Expect = 1e-32 Identities = 344/511 (67%), Gaps = 11/511 (2%) Strand=Plus/Minus Query 156027 GGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCTGATCTACATACCGA 156083 || |||| ||||||||||||| |||| | | |||||||| ||||| || || ||| Sbjct 233944 GGTTCCAAATACATAGCAAAAGCACCAGGGCGTTTGTTGCCACCTTGATCCACGTAACGA 233885 Query 156084 GCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTT-CC 156142 || || || |||||||||| |||||||||| |||||||||||| ||| |||||| || Sbjct 233884 GCGGTATTGTTGAAGACACGAAGCATAGGAAGAATACCATTGGAGTAGCCGTTGGTTCCC 233825 Query 156143 GCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCA 156202 ||| || | || || | | |||| || || || | || ||||| ||||||| | Sbjct 233824 GCG-ATGTAAGAGCCTGTGGCACGAATGTTGTGGATGTTGAGACCAATGCCACCTGCCGT 233766 Query 156203 TTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTC 156262 || |||||||| || || | || | ||| | | | |||||||| || || || |||| Sbjct 233765 CTTGGAAATTTGGGCACACACTTTGAGAGTTTCGTAGATACCTTCGATGGAGTCTTCTTT 233706 Query 156263 CATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGT 156322 ||| | || | | || || | ||| ||||| || || || |||||||||| || Sbjct 233705 CATGGTGAGCAAGAAACAGGAGGAGAGTTGGGGTCGAGGAGTGCCTGCGTTGAATAAGGT 233646 Query 156323 AGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTC 156382 ||| | ||||| | || ||||| | ||||| | ||| || || || || Sbjct 233645 AGGACTAGCATGGGTGAAGTACTTTTCGGACATGAGGTTGTAGGTTTCAATAGCAGAGTC 233586 Query 156383 AAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTAC 156442 || || || || || | || | || | ||| || ||| |||||||| | | Sbjct 233585 AATATCTTCACCATGGATGCCGACGGCCACACGCATGATCAAATGTTGAGGACG---TTC 233529 Query 156443 AATCACT---CCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||| |||| ||| || ||| || | ||||||||| || || ||||| ||| | Sbjct 233528 AGCCACTTTGCCATTGATTTTCAAAAGATACGAGCGTTCCAGTGTCTTGAACCCAAAAAA 233469 Query 156500 ATCAAACAGAAAATCACGGTTGTAATCAATC 156530 | | |||||||||| ||| |||| Sbjct 233468 GTTGTAGCCGAAATCACGGTCATAAATAATC 233438 >seq2 Length=1684868 Score = 143 bits (158), Expect = 8e-29 Identities = 341/515 (66%), Gaps = 3/515 (1%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 || |||||||| || || |||||||| ||||| |||| | ||| ||||| Sbjct 855519 ATGTCAGGATGCCAAGGTTCAAGATACATGGCAAAGGCACCAGGACGTTTGTTACCACCT 855460 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || ||||| || || || || ||||| |||| |||||||||| ||||||||||||| Sbjct 855459 TGGTCGACATAACGGGCTGTGTTGTTGAAAACACGCAGCATAGGAAGAATACCATTGGAA 855400 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 |||||| || || ||| | ||||| | | |||| ||| || || | || ||| Sbjct 855399 TAGCCATTTGTACCAGCAATGTAAGAACCCGTAGCACGAATATTGTGGATGTTGAGACCA 855340 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 || ||||||| || || ||||| || || | || | ||| | | || || || Sbjct 855339 ATGCCACCTGCTGTCTTGGAGATTTGGGCACACACTTTGAGAGTTTCATAGATGCCCTCG 855280 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 ||||| || |||| ||| | || | | || || | ||| || || ||||| || Sbjct 855279 ATAGAGTCTTCTTTCATGGTGAGCAAGAAACAGGAGGACATTTGGGGACGAGGTGTACCG 855220 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 || ||||||| ||||| ||||||| |||| | || | |||||| | ||| || Sbjct 855219 GCATTGAATAAAGTAGGGCTTGCATGTGTAAAGAATTTTTCGGACATAAGGTTGTAAGTT 855160 Query 156369 TCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGC 156428 || | || | || ||||||||||| || | || | ||| || ||| Sbjct 855159 TCAATGGCAGAGTCGATATCTTCCCCGTGAATACCAATGGCCACACGCATAATCAAATGT 855100 Query 156429 TGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTA 156488 |||||||| ||| | | | |||| ||| || ||| || | |||||||| || || Sbjct 855099 TGAGGACGTTCTGCTACCTTGCCATTGATTTTCAAAAGATAGGAGCGTTCCAAGGTCTTG 855040 Query 156489 AACCCGAAATAATCAAACAGAAAATCACGGTTGTA 156523 || || ||| | | || ||||||||| | ||| Sbjct 855039 AATCCAAAAAAGTTGTACCCAAAATCACGATCGTA 855005 Score = 132 bits (146), Expect = 1e-25 Identities = 261/381 (69%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCG 155934 |||||||||| ||||| || ||| || || ||||| | |||||| | ||| | | Sbjct 996398 GGGCAAAACAAAGACCATTGTTCATT--CGCTTCCACACGTTTCATAAAGAGATCGCACA 996455 Query 155935 CCCAAATAGCATAGAAA-AGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGT 155993 |||||| || ||||| ||||| | || | || || | ||| ||||| || Sbjct 996456 CCCAAAGTCCA-AGAAAGAGGTCACGAGCACGTAGTTCTTCCTTGCCAGAGTTCTTGCGG 996514 Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCA 156053 || || || || || || ||||| ||| || |||| |||||||||||| |||||| Sbjct 996515 AGGTCCAAAAAGTCAATAACATCAGCATGCCAAGGTTCCAAATACATAGCAAAGCTACCA 996574 Query 156054 TTCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || | || |||||| || ||| | || ||||| | |||| |||| | ||||| Sbjct 996575 TTGCGTTTGCCGCCACCTTGTGTCACAAAACGGGCAGTATCATTGTAGACTCGAAGCATG 996634 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 || ||||| |||||||| || |||||||| || ||||| || ||||| | || | Sbjct 996635 GGTATAATGCCATTGGACGTACCATTGGTGCCTGCAATATATGACCCAGAGGCTCGGATT 996694 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 || |||| | ||||| |||||||| |||| |||||||| || || | | | Sbjct 996695 TTTTGAAAGCCAACTCCAACACCACCTGCTGATTTGGAAATTTGTGCACAGGTCGACAGA 996754 Query 156231 GTATTGAAAATACCTTCAATA 156251 |||| |||| ||||||||| Sbjct 996755 GTATCATAAATGCCTTCAATA 996775 >seq67 Length=1953875 Score = 114 bits (126), Expect = 4e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| |||||||||||| || | || || | ||| |||| ||| | | ||| | Sbjct 1506419 TTTACCAATAGCATCAATTTCATCCACAAAGATAATACAGGGAGCATTCTTCTTGGCATT 1506478 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| || || | ||||| || | || | ||| ||| ||||||| ||||||||||| Sbjct 1506479 GGCAAACAAATCACGCACACGAGAAGGACCCACACCGACAAACATTTCAACAAATTCAGA 1506538 Query 289146 AGCGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | ||||||| |||| ||| | |||| ||||| || ||| ||| | || | ||| | Sbjct 1506539 ACCGGATACACTGAA-GAAGGGTACACCGGCTTCACCAGCTGTCGCCTTTGCTAAAAGGG 1506597 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 | ||||| || ||||| ||||| ||||| Sbjct 1506598 TTTTACCAGTACCAGGAGGTCCTAATAATA 1506627 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| | ||| || |||||| |||| || || | ||| ||||||||| | Sbjct 1238846 ATTTCTTTTAAACGTGGGACACCAAGGGTAACATTTTTACTAGAC---ACACCAGCATAA 1238790 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 ||||||||||||| ||| | |||||||| || ||||| ||| ||| || ||||| | Sbjct 1238789 TGGAAAGTATTCAAAGTCATTTGAGTAGCAGGTTCACCGATAGATTGAGCAGCAATTGTT 1238730 Query 301936 CCAACCATTTCTCCTGGTGCTACAA 301960 || |||||||| || || ||||||| Sbjct 1238729 CCCACCATTTCACCAGGAGCTACAA 1238705 >seq23 Length=2342558 Score = 104 bits (114), Expect = 7e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||| |||||||||||| |||||||| || | ||| |||| ||||| | ||| || Sbjct 921122 TTGCCAATAGCATCAATTTCATCAATGAAGATAATACAAGGAGCATTTTTCTTGGCAGTT 921063 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||||| | || | ||||| |||| || | ||| ||| ||||||| ||||||||||| Sbjct 921062 GCAAAAAGATCACGGACACGAGATGGACCCACACCGACAAACATTTCGACAAATTCAGAC 921003 Query 289147 GCGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || || |||| ||| | ||| ||||| ||||| || | || | |||||| Sbjct 921002 CCTGACACACTGAA-GAAGGGAACAGCCGCTTCACCTGCAGTAGCTTTGGCTAAAAGTGT 920944 Query 289206 CTTACCTGTTCCAGGTGGTCC 289226 ||||| || || || || || Sbjct 920943 TTTACCAGTACCGGGAGGACC 920923 >seq17 Length=590484 Score = 98.7 bits (108), Expect = 3e-15 Identities = 249/378 (66%), Gaps = 3/378 (1%) Strand=Plus/Plus Query 155876 GGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGC 155935 ||||||||||| ||||| || ||| | || |||| ||| |||| ||||| | | Sbjct 158029 GGGGCAAAACAAGGACCATTGTTCATTGGCTTCCACTCGCTTCATGAATAAATCACACAC 158088 Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAG 155995 ||||| | || ||| || || | || || || | |||| ||| || || | Sbjct 158089 CCAAAGACCAAGGAAGAGATCACGCGCACGAAGTTCTTCTTTGCCGGAATTTTTGCGCAA 158148 Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATT 156055 || || || || | ||| ||| || || || ||||| || ||||| || || Sbjct 158149 GTCCAAAAAGTCAATCACATCCACATGCCAAGGTTCGAGGTACATGGCGAAACTGCCGTT 158208 Query 156056 CCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112 ||| || |||||| || |||| | || ||||| | ||| | |||| |||||||| Sbjct 158209 CCTTTTACCGCCACCTTGCGTTACAAATCGTGCAGTATCGTTGTAAACACGGAGCATAGG 158268 Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATT 156172 | |||||| ||||| ||||||||||| || ||| | || || || |||| || Sbjct 158269 CACAATACCGTTGGAGGTGCCATTGGTACCAGCAATGTAGGATCCTGACCCCCGAATCTT 158328 Query 156173 ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGT 156232 || | | | || | |||||| | ||||||| |||||||| || | | | || Sbjct 158329 TTGGAAACCAACACCCACACCACCAGCGGATTTAGAGATTTGAGCACAGGTCATCAATGT 158388 Query 156233 ATTGAAAATACCTTCAAT 156250 || | |||| |||||||| Sbjct 158389 ATCGTAAATGCCTTCAAT 158406 >seq1 Length=3895514 Score = 96.9 bits (106), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| | ||| || |||||| |||| || || | ||| ||||||||| | Sbjct 2660244 AATTTCTTTCAAACGAGGGACACCAAGGGTAACATTTTTACTAGAC---ACACCAGCATA 2660300 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||||| ||| | |||||||| || ||||||||| ||| || ||||| | Sbjct 2660301 ATGGAAAGTATTCAAAGTCATTTGAGTAGCAGGTTCACCAATAGATTGAGCAGCAATTGT 2660360 Query 301935 ACCAACCATTTCTCCTGGTGCTAC 301958 || |||||||| || || ||||| Sbjct 2660361 TCCCACCATTTCACCAGGAGCTAC 2660384 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 |||| ||| | ||||| ||| |||| |||||||||||||| ||||||| | | Sbjct 2702628 AATAGTTCACGCACACGCCTTGCACCAACGCCAACATACATTTCATCAAATTCGCTACCA 2702687 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 | || ||| | |||||| |||||||| || || |||| ||||| | || ||| Sbjct 2702688 CTCATAAAAAAGAAGGGTACATTCGCTTCGCCAGCCACCGCCCGCGCCAACATGGTTTTA 2702747 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT-- 289267 || || ||||| || ||||| | || || |||||||| | || | || || ||| Sbjct 2702748 CCAGTGCCAGGAGGACCCTCGAGTAAGACGCCCTTTGGGAGCTTACCGCC--CA-ACTCG 2702804 Query 289268 -TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 || | || | ||| | |||||||| || ||||| || | ||| | |||||| ||| Sbjct 2702805 GTAAACTTTTGAGGATTTCGTAAAAATTGCACGATTTCTTCCAATTCTTGTTTTGCTTCA 2702864 Query 289327 TCACATCCTGCTACATCA 289344 ||| ||| ||||||| Sbjct 2702865 TCAACGCCTTGTACATCA 2702882 >seq8 Length=1007018 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 353931 CCATACTTCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACC 353990 ||||||||| | || | || | ||||||| || | |||| | ||| | ||||| Sbjct 529459 CCATACTTCAGTACATAAAGCTTCAGAGAATTCACGGTTGTGAGTAACAATTACAACACC 529518 Query 353991 CCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATT 354050 ||| |||| |||| || || || || | |||||| || || |||||||| || |||| Sbjct 529519 ACCACCATAGTTCTTGATGGCAGTTGCCAAAGCACCTAGAGATTCACGGTCCAGATAATT 529578 Query 354051 AGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTAC 354110 ||||||||||| || | || | || |||| ||||||| || || | | || | Sbjct 529579 GGTAGGTTCGTCCAGTACCAGCATATGAGGCTTGTTCCACATGGCAGCGCCAATCACCAA 529638 Query 354111 CTTAACCTTCTGTCCGCCTGATAG 354134 || ||||| ||||| || || || Sbjct 529639 TTTCACCTTTTGTCCACCAGAGAG 529662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815827379678