Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-18 seq67 93.3 5e-13 seq2 91.5 2e-12 seq26 87.8 2e-11 >seq5 Length=1173598 Score = 111 bits (122), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || ||| ||| || || || | ||| ||||| || || | || Sbjct 889442 GCTTGGCCAATTCACCAGGCAAGATGAGACGAACAGAGGTTTGGATTTCACGAGAAGAGA 889501 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || |||| | ||| |||| | || || || | | Sbjct 889502 TAGTGGAGCGCTTGTTGTAGGCAGCCAACTTGGAGGCTTCGGAAGCAATACGTTCAAAGA 889561 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| ||||||| || ||||| | |||||||||||| || |||||||| Sbjct 889562 TATCGTTGACAAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCGGTGTCGGGGT 889621 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGA 1254553 |||| ||||| | ||| ||||| ||| |||| Sbjct 889622 GCACTTGCTTCAACACTTTGTAAATGTACGA 889652 >seq67 Length=1953875 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| ||| ||| ||| || || || | ||| ||||| || || | || Sbjct 310797 GCTTGGCCAATTCACCGGGCAAGATAAGACGGACAGAGGTTTGGATTTCACGGGAAGAGA 310738 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| | |||| | || || | | | || || || | | Sbjct 310737 TGGTGGAACGCTTGTTGTAAGCGGCCAACTTGGAAGCTTCAGAGGCAATACGTTCAAAGA 310678 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| ||||||| || ||||| | |||||||||||| || |||||| | Sbjct 310677 TATCGTTGACAAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGAT 310618 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||||||||| ||| Sbjct 310617 GGACTTGCTTCAACACCTTGTAAATG 310592 >seq2 Length=1684868 Score = 91.5 bits (100), Expect = 2e-12 Identities = 171/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || |||| ||| || || || ||||| || | | || ||||| Sbjct 855459 TGGTCGACATAACGGGCTGTGTTGTTGAAAACACGCAGCATAGGAAGAATACCATTGGAA 855400 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | ||| || || || || | ||| | || | || || | ||||| | | || Sbjct 855399 TAGCCATTTGTACCAGCAATGTAAGAACCCGTAGCACGAATATTGTGGATGTTGAGACCA 855340 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || || | ||||||||| | || ||| |||||| || || |||||||||||| Sbjct 855339 ATGCCACCTGCTGTCTTGGAGATTTGGGCACACACTTTGAGAGTTTCATAGATGCCCTCG 855280 Query 1630246 ATCGAGTCGGCCTTCAT-GTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| | ||||| || | ||||| || || || |||| || | | || || Sbjct 855279 ATAGAGTCTTCTTTCATGGTGAGCAAGAAA-CAGGAGGACATTTGGGGACGAGGTGTACC 855221 Query 1630305 GGCGTTGAA 1630313 ||| ||||| Sbjct 855220 GGCATTGAA 855212 >seq26 Length=475556 Score = 87.8 bits (96), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| || || |||||||||||| | || ||| | || |||||| |||| ||||| Sbjct 189245 GCTGCCAATTATCTTGACATCAAGCCTTTACTGGATGTGGGTTGCAAGACTGTTGCCAAT 189186 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||| | |||| || ||||| || | || || ||| Sbjct 189185 ATGATCAAGGGCAAGACTGCCGAAGAAATCCGAAAAATTTTCAATATC 189138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107131485919798