Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq67 159 5e-33 seq5 156 7e-32 seq89 118 2e-20 seq2 109 9e-18 >seq67 Length=1953875 Score = 159 bits (176), Expect = 5e-33 Identities = 203/278 (73%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||||| ||| ||| ||| Sbjct 310836 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCCAATTCACCGGGCA 310777 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || | ||| ||||| || |||| ||| ||| |||||||| || Sbjct 310776 AGATAAGACGGACAGAGGTTTGGATTTCACGGGAAGAGATGGTGGAACGCTTGTT-GTAA 310718 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | || || | | | || || || | || ||||||||||| |||||| Sbjct 310717 GCGGCCAACTTGGAAGCTTCAGAGGCAATACGTTCAAAGATATCGTTGACAAAGGAGTTC 310658 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||| || || ||||| | ||||||| Sbjct 310657 AAGATGGACATGGCCTTGTTGGAGATACCAGTGTCGGGATGGACTTGCTTCAACACCTTG 310598 Query 1485709 TAAACAAAGGACGAGTACGAGGCATAGTTTTTCTTGCG 1485746 |||| ||| ||||||||| || |||||| Sbjct 310597 TAAA---------TGTAAGAGGCATAGGATTCCTTGCG 310569 >seq5 Length=1173598 Score = 156 bits (172), Expect = 7e-32 Identities = 202/278 (73%), Gaps = 11/278 (4%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||||||||| || || || |||||| |||||| ||| || ||| Sbjct 889403 TGTACTTGGTAACGGCCTTGGTACCTTCAGACACAGCGTGCTTGGCCAATTCACCAGGCA 889462 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || || || | ||| ||||| || || | ||| ||| ||||||||| || Sbjct 889463 AGATGAGACGAACAGAGGTTTGGATTTCACGAGAAGAGATAGTGGAGCGCTTGTT-GTAG 889521 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | ||| |||| | || || || | || ||||||||||| |||||| Sbjct 889522 GCAGCCAACTTGGAGGCTTCGGAAGCAATACGTTCAAAGATATCGTTGACAAAGGAGTTC 889581 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || |||||||||||| ||||| | ||| ||| Sbjct 889582 AAGATGGACATGGCCTTGTTGGAGATACCGGTGTCGGGGTGCACTTGCTTCAACACTTTG 889641 Query 1485709 TAAACAAAGGACGAGTACGAGGCATAGTTTTTCTTGCG 1485746 |||| ||||||||||||| || ||| || Sbjct 889642 TAAA---------TGTACGAGGCATAGGATTCCTTACG 889670 >seq89 Length=1828303 Score = 118 bits (130), Expect = 2e-20 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || || || || ||| |||||| ||| || ||| Sbjct 53327 TGTACTTGGTGACAGCCTTGGTACCTTCAGACACAGCATGCTTGGCCAATTCACCAGGCA 53386 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || | ||| ||||| || || | ||| || ||||||||| || Sbjct 53387 AAATAAGACGGACAGAGGTTTGGATTTCACGAGAAGAGATAGTAGAGCGCTTGTT-GTAG 53445 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | || || | | || || |||| || |||||||| || |||||| Sbjct 53446 GCAGCCAACTTGGAAGCTTCAGAAGCAATACGTTCGAAGATATCGTTGACGAAGGAGTTC 53505 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||| ||||| || ||||| ||||| ||||| | |||||| Sbjct 53506 AAGATGGACATGGCCTTGTTAGAGATACCAGTATCGGGATGCACTTGCTTCAAAACCTTG 53565 Query 1485709 TAAA 1485712 |||| Sbjct 53566 TAAA 53569 >seq2 Length=1684868 Score = 109 bits (120), Expect = 9e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| || || |||| ||| || || || ||||| || | || || ||||| Sbjct 855459 TGGTCGACATAACGGGCTGTGTTGTTGAAAACACGCAGCATAGGAAGAATACCATTGGAA 855400 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | ||| || || || || | ||| | |||| || || | ||||| | | || Sbjct 855399 TAGCCATTTGTACCAGCAATGTAAGAACCCGTAGCACGAATATTGTGGATGTTGAGACCA 855340 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || || | ||||||||| | || ||| ||| || || || |||||||||||| Sbjct 855339 ATGCCACCTGCTGTCTTGGAGATTTGGGCACACACTTTGAGAGTTTCATAGATGCCCTCG 855280 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||||| | |||||| | || || || || || |||| || || | || ||| Sbjct 855279 ATAGAGTCTTCTTTCATGGTGAGCAAGAAACAGGAGGACATTTGGGGACGAGGTGTACCG 855220 Query 2073781 GCATTGAA 2073788 |||||||| Sbjct 855219 GCATTGAA 855212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916236400791266