Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq34 120 2e-22 seq67 105 4e-18 seq8 96.9 2e-15 seq56 95.1 8e-15 >seq34 Length=2241197 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34769 ACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827 |||| ||| |||| || | ||||| ||||| || || || |||| | | ||| |||| || Sbjct 1643094 ACCAAGTGTAATGTTGAT-TCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTC 1643036 Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887 || |||||| || || |||||||| |||||||| || | || | || |||||||| | Sbjct 1643035 CAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTG 1642976 Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947 || |||||||||||| | || || ||| || || || || | || || || || Sbjct 1642975 AATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTT 1642916 Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||| |||||||| ||||| Sbjct 1642915 GCCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Score = 109 bits (120), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| |||||||||| | | |||| || | ||||||||| ||||| Sbjct 1642848 TCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAA 1642789 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||||||||| || || | || | || |||||||| | |||||||| ||||| || Sbjct 1642788 ATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTTGTCTTGAATTTTTTGCTTGAC--AT 1642731 Query 34907 GCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTT 34962 ||||||| ||| | || || || | || |||||||| || || || ||||| Sbjct 1642730 --TATCGATTGAATCAGAAGATTCTACTTCCAGAGTAATGGTCTTGCCGGTAAGAGTCTT 1642673 Query 34963 TACAAAGATCTGCATG 34978 ||||| || |||||| Sbjct 1642672 AACAAAAATTTGCATG 1642657 >seq67 Length=1953875 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || ||||| |||||||| ||||| || || | || |||| Sbjct 1416137 AGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCT 1416196 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || || ||||| || ||||| |||||| | || | || ||||| || Sbjct 1416197 TCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTTATCT 1416256 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||||||||||| | || || || || || || || | ||| |||||| Sbjct 1416257 TGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAATGGTC 1416316 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || || ||||| || || || |||||| Sbjct 1416317 TTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 1416349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| || || || | | || |||| |||| |||||| |||||||| Sbjct 1415474 TCCTTTTGGATGTTGTAATCTGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAA 1415533 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| ||||||||||| | || | || |||||||| | || |||||||| || Sbjct 1415534 ATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTG 1415593 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || ||| | || || || | || || ||||| || || | ||||| ||| Sbjct 1415594 TCGATAGAGTCAGATGATTCCACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACA 1415653 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 1415654 AAGATTTGCAT 1415664 >seq8 Length=1007018 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||||| || ||||| ||||| || || | || |||| Sbjct 757504 AGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 757563 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| |||| ||||||||||| | || | || ||||| || Sbjct 757564 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT 757623 Query 34886 TTTATTTTTTGTTTGACG 34903 | |||||||| |||||| Sbjct 757624 TGGATTTTTTGCTTGACG 757641 >seq56 Length=2073579 Score = 95.1 bits (104), Expect = 8e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||| || ||||| ||||| || || | || |||| Sbjct 1295635 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCT 1295576 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||| || ||||| |||| ||||||||||| | || | || |||||||| Sbjct 1295575 TCCAATTGCTTACCAGCGAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 1295516 Query 34886 TTTATTTTTTGTTTGAC 34902 | |||||||| ||||| Sbjct 1295515 TGGATTTTTTGCTTGAC 1295499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692426878186