Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq67 100 2e-16 seq34 87.8 1e-12 >seq67 Length=1953875 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || ||||| || ||||| | ||| ||| | Sbjct 1415892 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1415833 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||||||| ||||| ||||| | ||| |||||| Sbjct 1415832 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1415773 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| ||||| || |||| || | | || | | ||||||||| Sbjct 1415772 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415713 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| ||||| | ||| ||||| Sbjct 1415712 ATCCAAAAGGAATCTACTCTTCACTTGGTG 1415683 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || ||||| || ||||| | ||| ||| | Sbjct 1416120 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACTATTACTCTGGAAGTGGAATCATCT 1416061 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||||||| ||||| ||||| | ||| |||||| Sbjct 1416060 GACTCTATCGACAATGTGAAGCAAAAGATTCAAGATAAGGAAGGTATTCCCCCCGATCAG 1416001 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| ||||| || |||| || | | || | | ||||||||| Sbjct 1416000 CAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGCACTCTCTCTGACTACAAC 1415941 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| ||||| | ||| ||||| Sbjct 1415940 ATCCAAAAGGAATCTACTCTTCACTTGGTG 1415911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || || || ||||| || ||||| | ||| ||| ||| Sbjct 1481573 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACATTGGAAGTGGAAAGCTCT 1481514 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || |||||||||||| || || ||||| | || ||||| Sbjct 1481513 -GACTCTATCGACAATGTGAAACAAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCA 1481455 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | |||| ||| |||||||| | || || | | || | | |||||||| Sbjct 1481454 GCAACGTTTGATTTTTGCTGGTAAACAATTAGAAGATGGCCGCACTCTCTCTGACTACAA 1481395 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||| ||||| | ||| ||||| Sbjct 1481394 CATTCAAAAGGAATCTACTCTTCACTTGGTG 1481364 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 || || ||||||||||| ||||| ||| | || ||||| ||||||||| | ||| ||| Sbjct 1416354 TTCAACATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATTACCTTGGAAGTGGAA 1416295 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 | ||| | | | | | || |||||||| || ||||| ||||| | || Sbjct 1416294 TCCTCCGACTCCATTGACAATGTCAAACAAAAAATCCAAGATAAGGAAGGTATTCCTCCA 1416235 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 || || || | || || | ||| |||||||| |||| || | | || | | ||| Sbjct 1416234 GACCAACAACGTCTCATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACTCTTTCTGAC 1416175 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||||||| ||||| | ||| ||||| Sbjct 1416174 TACAACATTCAAAAGGAATCTACTCTTCACTTGGTG 1416139 >seq34 Length=2241197 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||||||||| || ||| | || ||||| |||||||| | ||| || || Sbjct 1642655 AACATGCAAATTTTTGTTAAGACTCTTACCGGCAAGACCATTACTCTGGAAGTAGAATCT 1642714 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| | ||| | || || ||||| ||| || || ||||| | ||| ||| Sbjct 1642715 TCTGATTCAATCGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGAATTCCCCCTGAT 1642774 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || |||| |||| || || || || | || || | | ||| | |||||||| Sbjct 1642775 CAACAACGACTGATTTTCGCTGGAAAGCAATTAGAAGATGGAAGAACTTTATCGGACTAC 1642834 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| ||||| | || ||||| Sbjct 1642835 AACATTCAAAAGGAATCTACACTTCATTTGGTG 1642867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876343036766