Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq67 165 6e-36 seq34 147 2e-30 >seq67 Length=1953875 Score = 165 bits (182), Expect = 6e-36 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || ||||| ||||||||||| || || | | ||||| Sbjct 1481358 ACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGAGTGCGGCC 1481417 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | ||||| | ||||||||| || |||||||| || || Sbjct 1481418 ATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTT 1481477 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | || |||||| ||| ||||| | || || Sbjct 1481478 GTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACTTCCAATGTAAT 1481537 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| ||||| || ||||| || ||||| Sbjct 1481538 AGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 1481573 Score = 156 bits (172), Expect = 3e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || ||||| ||||||||||| || |||| | ||||| Sbjct 1480902 ACGAAGCACCAAATGAAGGGTCGATTCCTTTTGAATGTTGTAGTCCGACAAAGTGCGGCC 1480961 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || |||||| | ||||||| ||| || || || || ||||| || || Sbjct 1480962 ATCTTCCAATTGCTTACCAGCAAAGATCAATCGTTGTTGGTCGGGAGGGATACCTTCCTT 1481021 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | | |||||| ||| ||||| ||||| || Sbjct 1481022 GTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAGAGTAAT 1481081 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | || || ||||| || ||||| Sbjct 1481082 AGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 1481117 Score = 150 bits (166), Expect = 1e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 |||||| || | | ||| ||||||||||| || || ||||| ||||| ||||| ||||| Sbjct 1415434 TTGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATC 1415493 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | || || ||| || | ||| || || || | ||||| | |||||| || || Sbjct 1415494 TGACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGG 1415553 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 |||||||| || |||||||| | |||||||| ||| | || | || |||||| ||| Sbjct 1415554 AGGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTC 1415613 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| ||||| |||||||| || || || ||||| || ||||| Sbjct 1415614 CACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 1415664 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || ||||| ||||| ||||| ||||| | || ||||| Sbjct 1481130 ACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAAAGAGTGCGGCC 1481189 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || |||||| | || | | ||| ||||| || || ||||| || || Sbjct 1481190 ATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGGATACCTTCCTT 1481249 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | | |||||| ||| ||||| | || || Sbjct 1481250 GTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACTTCCAATGTAAT 1481309 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| ||||| || ||||| || ||||| Sbjct 1481310 AGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 1481345 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || ||||| ||||||||||| || || | || || || Sbjct 1416133 ACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCC 1416192 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | || | | ||| || || || |||||||| || || Sbjct 1416193 ATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGAATACCTTCCTT 1416252 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||||||||||||| | || | | ||| || ||| ||||| | || || Sbjct 1416253 ATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACTTCCAAGGTAAT 1416312 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || |||||||| | || || || || || ||||| || || Sbjct 1416313 GGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGTTGAA 1416354 >seq34 Length=2241197 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || ||||| ||||||||||| || |||| | || | Sbjct 1642873 ACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGATAAAGTTCTTCC 1642814 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | |||| || ||| ||||| || ||||| || || || Sbjct 1642813 ATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGAATTCCTTCCTT 1642754 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||| |||||| | || | | |||||| ||||||||| ||||| || Sbjct 1642753 GTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACTTCCAGAGTAAT 1642694 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | || |||||||| || ||||| || Sbjct 1642693 GGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCATGTT 1642655 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || | || ||||| |||||||| || ||||| | | ||| || ||| || Sbjct 1643094 ACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGATAAGGTACGCCCATCTTCC 1643035 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || |||||| | |||| | ||||||||| || || ||||| || |||||||| Sbjct 1643034 AATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGGATACCTTCCTTGTCTTGA 1642975 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||||||||||| | || | || |||||| ||| ||||| | ||| ||||||||| Sbjct 1642974 ATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACTTCCAAAGTAATAGTTTTG 1642915 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| || ||||| || ||||| Sbjct 1642914 CCTGTAAGGGTCTTGACAAAGATTTGCAT 1642886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218758683254