Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq67 132 5e-26 seq34 132 5e-26 seq2 86.0 6e-12 seq22 84.2 2e-11 >seq67 Length=1953875 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| |||||||| ||||| ||||||||||| Sbjct 1481119 CCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGAA 1481178 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||| ||||||||| |||| |||||||| ||||||||||| Sbjct 1481179 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGGG 1481238 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| ||| Sbjct 1481239 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCAATTGAGTCAGAGCTTTCCACT 1481298 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||| || || || || ||||||||| Sbjct 1481299 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCATA 1481346 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1481347 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAG 1481406 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||||||||||||| | |||| |||||||||||| ||||| Sbjct 1481407 AGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGGA 1481466 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| ||| Sbjct 1481467 ATACCTTCCTTGTCTTGAATCTTTTGTTTCACATTGTCGATAGAGTCAGAGCTTTCCACT 1481526 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||| || || || || ||||||||| Sbjct 1481527 TCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 1481574 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1415666 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415725 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||| ||||||||| | |||| ||||||||||||||| || Sbjct 1415726 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1415785 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||||| || | | || | | ||| | | ||| ||| Sbjct 1415786 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1415845 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1415846 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415893 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1415894 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 1415953 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||| ||||||||| | |||| ||||||||||||||| || Sbjct 1415954 AGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGGA 1416013 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| ||||| || | | || | | ||| | | ||| ||| Sbjct 1416014 ATACCTTCCTTATCTTGAATCTTTTGCTTCACATTGTCGATAGAGTCAGATGATTCCACT 1416073 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1416074 TCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1416121 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 1415435 TGTCCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCT 1415494 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || || | ||||| | ||| ||||| || | |||| ||||||||| || ||| Sbjct 1415495 GACAAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGA 1415554 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| ||| |||||||| | | || | | ||| | | ||| Sbjct 1415555 GGAATACCTTCCTTGTCTTGAATCTTTTGTTTAACATTGTCGATAGAGTCAGATGATTCC 1415614 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | ||| | |||||||| ||||| || || || || ||||||||| Sbjct 1415615 ACTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415665 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| |||||||| ||||| |||||||| || Sbjct 1416122 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAA 1416181 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||||||||||| |||| |||||||| || || ||||| Sbjct 1416182 AGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1416241 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||||||||||| | | || | | ||| | || ||| ||| Sbjct 1416242 ATACCTTCCTTATCTTGGATTTTTTGTTTGACATTGTCAATGGAGTCGGAGGATTCCACT 1416301 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||||| || | || || ||||| |||||||| Sbjct 1416302 TCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 1416348 >seq34 Length=2241197 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||||| ||| || || || || | ||| ||||| ||||| || |||||||| Sbjct 1643112 CCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAATCAGAT 1643053 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| | ||| || |||||| ||||||||||||||||||||||||| Sbjct 1643052 AAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCGGGAGGG 1642993 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| |||||||| | | || | | ||| | || ||| ||| Sbjct 1642992 ATACCTTCCTTGTCTTGAATCTTTTGTTTGACGTTGTCGATAGAGTCAGAGGATTCCACT 1642933 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || ||||| || | || || || || ||||||||| Sbjct 1642932 TCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCATA 1642885 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| ||||||||| ||||| |||||||| || Sbjct 1642884 CCACCACGAAGACGAAGCACCAAATGAAGTGTAGATTCCTTTTGAATGTTGTAGTCCGAT 1642825 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||| || ||||| | ||||| ||||| ||||| || || Sbjct 1642824 AAAGTTCTTCCATCTTCTAATTGCTTTCCAGCGAAAATCAGTCGTTGTTGATCAGGGGGA 1642765 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||||||| || | | || | | || | | ||||||| Sbjct 1642764 ATTCCTTCCTTGTCTTGAATTTTTTGCTTGACATTATCGATTGAATCAGAAGATTCTACT 1642705 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | || || || || |||||||| Sbjct 1642704 TCCAGAGTAATGGTCTTGCCGGTAAGAGTCTTAACAAAAATTTGCAT 1642658 >seq2 Length=1684868 Score = 86.0 bits (94), Expect = 6e-12 Identities = 233/352 (66%), Gaps = 11/352 (3%) Strand=Plus/Minus Query 151100 AATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttt 151159 |||||||| || | ||||| | |||| || || || ||||| |||| || ||| || Sbjct 856131 AATGCATCAGCAAGGCCTTGTACACCTAGACCAATAGGGCGATGTCGCAAGTTCGATCTT 856072 Query 151160 tttGCAGTTTCAAT---AGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATTCACT 151216 | || |||||| ||||||| | ||| ||| || || || |||| | || | Sbjct 856071 TCGGC---TTCAATCACAGGGTAGTAGTTGACATCGATGATCTTGTTCAGGTTCTTGGCA 856015 Query 151217 ACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTAT-CATTATTGAT---ATA 151272 | ||| ||| |||||||| || |||||| | |||| || || | | | Sbjct 856014 ATCACCTTGGTCACCTTGTGCAATTTTTTGAAATCATA-GTATTCACGGTTCACCACAAA 855956 Query 151273 TTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTG 151332 | | |||||| || ||||| || || || | |||||| || | |||||| Sbjct 855955 GGAAGGCAGGGCAATACTGGCAAGATTGCAAACAGCGGCTTCGTCAGGACTGGAATATTC 855896 Query 151333 TACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTT 151392 || ||||| | || | ||||||||||| || ||| || || ||| ||| Sbjct 855895 CACAATTTCGGTGCAAAGGTTGCTGCATTTGATGGTTCCCAGGTTTTGCTGGTTGGATTT 855836 Query 151393 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGA 151444 |||||| || |||||||||||||||||| | || |||||||||| | |||| Sbjct 855835 GCGGTTACATGCGTCCTTGTATAACATGAATGGATTGCCGGTTTCCGTTTGA 855784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 150404 GTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGAC 150463 || || | ||| ||||||||||| ||||| || |||||| || || | ||||| Sbjct 856818 GTTCGGAGATAATACATGCCGGTCTTGAGTCCCTTCTTCCAGCCATAAAAGTGCATACTT 856759 Query 150464 GCCATTTTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGAT 150522 | || ||| | |||||| |||| |||| | | | ||| || |||||||||||| || Sbjct 856758 GTCAATTT-GCCAAAGTTGGGTACGCCAATAAAGATGTTCAAGCTTTGACTTTGATCAAT 856700 Query 150523 AAATGCTCCCCTGTCTGCTGCCATTTCAATCA 150554 || || || |||||||| ||||| ||||||| Sbjct 856699 GAACGCACCTCTGTCTGCCGCCATATCAATCA 856668 >seq22 Length=518773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| ||||| |||||||| || || |||| ||||| | ||| |||||| Sbjct 75891 GTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCTTCCAATTGCTTACCA 75832 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| | |||| |||||||||||| ||||| || ||||| ||||| |||||||| || Sbjct 75831 GCAAAAATCAAACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGGATTTTTTGCTT 75773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543425960800