Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq28 143 3e-29 seq2 138 1e-27 seq67 96.9 3e-15 >seq28 Length=432467 Score = 143 bits (158), Expect = 3e-29 Identities = 948/1506 (63%), Gaps = 36/1506 (2%) Strand=Plus/Minus Query 148269 TGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGAC 148328 || || || ||||| ||||| || || || | |||| ||| | ||||| || | Sbjct 234940 TGGAATTCACCGGCAAGCACACGACGTGTGTATAGGTTGGAGGTATAAGGTTCGAAGCAT 234881 Query 148329 TCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAG 148388 |||||| |||| ||| || | |||| |||||| ||||| || |||| | |||| Sbjct 234880 TCGTTGAAACCCAGAATTTGAGATGTCGATGCCGTAGGCATAGGTGCCACCAATAACGAG 234821 Query 148389 TTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC 148448 ||||||| |||| | | | || || ||||| | ||||| ||||| | | || Sbjct 234820 TTGCGCACACCGTGTTGACTGATCTTTTCCTTCAATGTTGCCCAATCCCATAAAGATGAT 234761 Query 148449 GGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTA 148507 ||||||||| |||||| ||||| ||||| || | | || | || || || | ||| Sbjct 234760 GGTGTCACGCCCCACATATCGTATTGCAGT-TGACCCTTGGAGACAGGACTTCCTTGGTA 234702 Query 148508 CGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTA 148567 | ||| | || | | ||||||||||| || || | || | | ||| Sbjct 234701 TGTTTCGTAGGTGCCTTCAACTTGAGCCAGTTCGCAAGAAGCTTCCAATGCCGCATGGTA 234642 Query 148568 AATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATA-C 148626 || || || |||||| |||||| | || ||| ||| | || ||| | Sbjct 234641 GATGGTTTCAAAAATTTGTTGGTTGAGTTTCTTGGCTTCATCGGATTCAAAGGG-ATAGC 234583 Query 148627 GCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAA 148686 ||| | ||| ||| || || ||||| || || || || | ||||| || || ||| Sbjct 234582 GCATCAGCATAAATGCATCAGCAAGACCTTGCACACCAAGACCAATAGGGCGATGTCGTT 234523 Query 148687 TGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGAT 148746 ||||||| | || | | | ||||||| ||| || |||||||||| | || Sbjct 234522 TGTTGGATCGTTCAGCTTCCACCACAGGATAGTAATTGATATCAATGATCTTGTTCAAAT 234463 Query 148747 TGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCA---TCTA 148803 | | |||||| | | | || |||| | ||||| || ||| | | Sbjct 234462 TTTTGGTGATCACCTTGGCGACTTTGTGCAGTTTCTTGAAATCATAGGATTCACGGTTCA 234403 Query 148804 CGATGCATC--GGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGC 148861 ||| | ||| | ||||||| ||| || || ||||| || ||||| ||| Sbjct 234402 CGACAAACGAAGGT--AAGGCGATACTGGCAAGGTTACACACAGCGACTTCATCAGGGCT 234345 Query 148862 GCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTG 148921 ||| || ||||| || | || ||||| ||||||||||| ||||| ||| | ||| Sbjct 234344 AGAGTATTCGACGATTTCTGTACAAAGATTACTGCATTTGATGGTGCCCAAGTTTTGTTG 234285 Query 148922 ATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 ||| || | |||||| || |||||||| ||||| | || ||||||||| || Sbjct 234284 ATTTGATTTCCGGTTGCAAGCATCCTTGTAGAGCATAAAAGGGTTCCCAGTTTCCGTTTG 234225 Query 148982 CGTTTCCACTATGAACCGATG-CAGGTCCTGCGCGCGCACTTGCTGCTCGTAG-CGACCC 149039 | ||||| || | | | || | |||||| || | | | | || || || Sbjct 234224 AGCTTCCAGGAT-AGCATACCACAATTTCTGCGCCTTCA-TGGTTTCACGCGCACGGCCT 234167 Query 149040 TCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCG 149099 ||| | |||||| ||| ||| | || || | || || | ||| | ||| || Sbjct 234166 TCCCGTTCGTATTTTTCATAGAGCTGTTCAAATTCGTCTCCCCAAACATCTTGGAGCCCA 234107 Query 149100 GGG----CACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCAT 149155 | |||||| | || | | ||||| |||| | ||| | ||| || ||||| Sbjct 234106 CGCGCTTCACTTG----GACAAAACAAGGACCAGTCGCCATTCGCTTCCACACGTTTCAT 234051 Query 149156 AAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCC 149215 ||| ||||| || | |||||| || || | ||| || || || | || || ||| Sbjct 234050 AAAGAGATCAGGGATCCAGAGGGCATAAAAGAGATCACGAGCACGGATTTCATCCTTGCC 233991 Query 149216 CATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACAC 149275 | || ||| || | | | | | || |||||||| ||||| || || | |||| Sbjct 233990 AACATTCTTGCGAAGATCCAAGAAGGTAAAGATGTCCGCATGCCAAGGTTCCAAATACAT 233931 Query 149276 CGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAA 149332 || | || || ||| ||| || || || || |||| || | | ||||| || Sbjct 233930 AGCAAAAGCACCAGGGCGTTTGTTGCCACCTTGATCCACGTAACGAGCGGTATTGTTGAA 233871 Query 149333 CACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATGCGACTGC 149391 || |||| |||||| ||| ||| ||| ||| |||||| || ||| | || Sbjct 233870 GACACGAAGCATAGGAAGAATACCATTGG-AGTAGCCGTTGGTTCCCGCGATGTAAGAGC 233812 Query 149392 CGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCC 149450 | || || | ||||| | ||||| || ||||| || ||||| ||| || || Sbjct 233811 CTGTGGCACGAATGTTGTGGATGTTGAGACCAATGCCACCTGCCGT-CTTGGAAATTTGG 233753 Query 149451 GCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGA 149510 || || | ||| || |||||| || |||||| ||| |||||||| |||| Sbjct 233752 GCACACACTTTGAGAGTTTCGTAGATACCTTCGATGGAGTCTTCTTTCATGGTGAGCAAG 233693 Query 149511 AAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGT 149570 || || ||| | | ||| || | | ||||| || ||| | ||| || || || || Sbjct 233692 AAACAGGAGGAGAGTTGGGGTCGAGGAGTGCCTGCGTTGAATAAGGTAGGACTAGCATGG 233633 Query 149571 GTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCA 149630 || || || || | | ||| | | ||| | || | | ||| || || || ||| Sbjct 233632 GTGAAGTACTTTTCGGACATGAGGTTGTAGGTTTCAATAGCAGAGTCAATATCTTCACCA 233573 Query 149631 TGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA 149690 |||||||| | ||| || ||||| | || ||| || || || || ||||||||| ||| Sbjct 233572 TGGATGCCGACGGCCACACGCATGATCAAATGTTGAGGACGTTCAGCCACTTTG---CCA 233516 Query 149691 ---ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAG 149747 ||||| | | || | ||| ||||||||| | ||||| | |||||| | || Sbjct 233515 TTGATTTTCAAAAGATACGAGCGTTCCAGTGTCTTGAACCCAAAAAAGTTGTAGCCGAAA 233456 Query 149748 TCGCGG 149753 || ||| Sbjct 233455 TCACGG 233450 >seq2 Length=1684868 Score = 138 bits (152), Expect = 1e-27 Identities = 959/1521 (63%), Gaps = 46/1521 (3%) Strand=Plus/Minus Query 148258 GATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACG 148317 |||| || | ||||| || ||||||||||| || || ||||| |||| |||| | | Sbjct 856511 GATTGACAATTTGAAATTCACCGGCGAGCACACGGCGTGTATACAAGTTGGACGTATAGG 856452 Query 148318 GTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTA 148377 ||||||| | ||||| ||||| || || | || | || |||||||| || | Sbjct 856451 GTTCAAAGCATTCGTTAAAGCCCAGGATTTGAGACGTTGACGCAGTGGGCATAGGTGCCA 856392 Query 148378 CCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCC 148437 | || || ||||| || | ||| | | | ||||| ||||| ||| |||| |||| Sbjct 856391 CAAGAAGAGAGTTTCGTACGCCGTGTTGACTAATTTTAGCCTTCAAAGCATCCCAATCCC 856332 Query 148438 AGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGC--GGCTAGCGGG 148495 | | | || || ||||| |||||||||||| |||| | || | | || || | || Sbjct 856331 ATAAAGACGTAGGCGTCACACCCCACATGTCGTATTGCA-ATTGACCCTTGGATA-CAGG 856274 Query 148496 GCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAG 148555 || || | ||| | || || |||| | | || ||||| ||| || || | Sbjct 856273 ACTACCTTGGTATGTTTCATAGGGACCGTCCACTTGAGCAAGTTCACAGGATGCTTCCAA 856214 Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTC 148615 |||| | | ||| || || || ||||| |||| |||| || ||| ||| Sbjct 856213 CGCGGCATGGTAGATTGTTTCAAAGATTTGTTTGTTCAGCATTTTGGCTTCATCGGATTC 856154 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | || ||||| ||| || || || |||||||| ||||| || | ||||| || Sbjct 856153 AAAGGGATAACGCATAAGCATGAATGCATCAGCAAGGCCTTGTACACCTAGACCAATAGG 856094 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC---GGATAGTGGTTGCGGTCGAT 148732 || ||| | ||| || || ||| || | | || |||| |||| ||||| Sbjct 856093 GCGATGTCGCAAGTTCGATCTTT-CG-GCT-TCAATCACAGGGTAGTAGTTGACATCGAT 856037 Query 148733 GATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 |||||||| || || | | |||||| || | || ||| || ||||| || Sbjct 856036 GATCTTGTTCAGGTTCTTGGCAATCACCTTGGTCACCTTGTGCAATTTTTTGAAATCATA 855977 Query 148793 CTTGTCA---TCTACGATGCATCGGTT--CACGGCGATAGAGGCTAGATTGCACACGGCC 148847 | ||| | || | || || || ||| ||| ||| |||||||| || || Sbjct 855976 GTATTCACGGTTCACCA--CAAAGGAAGGCAGGGCAATACTGGCAAGATTGCAAACAGCG 855919 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACG 148907 | || || || | || || || || |||| ||| || |||||||||||||| Sbjct 855918 GCTTCGTCAGGACTGGAATATTCCACAATTTCGGTGCAAAGGTTGCTGCATTTGATGGTT 855859 Query 148908 CCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCG 148967 |||| ||| | || ||| |||| ||| || ||||||||||| | |||| | || | Sbjct 855858 CCCAGGTTTTGCTGGTTGGATTTGCGGTTACATGCGTCCTTGTATAACATGAATGGATTG 855799 Query 148968 CCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCT 149025 || |||||| || | ||||| || | | || | | || || | | | | Sbjct 855798 CCGGTTTCCGTTTGAGCTTCCAAGATAGCATACCAT--AACTTTTGAGCTTTGA-TGGTT 855742 Query 149026 GCTCGTAGC--GACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTA 149083 | || ||| |||| || | || || ||| || ||||| | || || | Sbjct 855741 TCACG-AGCACGACCTTCGCGTTCATACTTTTCATAGAGAGCTTCGAATTCATCACCCCA 855683 Query 149084 GCAATCGTCGAGACCGGGG----CACTTGTGCGGGCACATGAGCGACCACACGCCGTCCG 149139 | || | | ||| || |||||| || ||||| ||||| |||||| | Sbjct 855682 GACCTCATGTAAACCAGGCGCCTCACTTGGGCAAA-ACATG---GACCATTCGCCGTTGG 855627 Query 149140 CGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCT 149199 | | || || |||||||| |||||||| | ||| || || || | ||| || || || Sbjct 855626 CTTCAACACGTTTCATAAAGAGATCGGGAATCCACAGAGCATAAAAGAGATCACGAGCAC 855567 Query 149200 TGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCC 149259 | || || ||| | || ||| || | | | | | || ||||| | |||| Sbjct 855566 GGATTTCGTCCTTGCCAACATTCTTGCGGAGATCCAAAAAGGTAAAGATGTCAGGATGCC 855507 Query 149260 ACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGC 149316 | || |||| |||| || | || || || ||| || || |||||||| | | Sbjct 855506 AAGGTTCAAGATACATGGCAAAGGCACCAGGACGTTTGTTACCACCTTGGTCGACATAAC 855447 Query 149317 GCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAG 149376 | | ||||||| || || || | |||||| ||| ||| ||| | ||| || ||| Sbjct 855446 GGGCTGTGTTGTTGAAAACACGCAGCATAGGAAGAATACCATTGGAATAGCCATTTGTAC 855387 Query 149377 -AGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCC 149434 ||| |||| | || || || | ||||| | ||||| || ||||| || || Sbjct 855386 CAGC-AATGTAAGAACCCGTAGCACGAATATTGTGGATGTTGAGACCAATGCCACCTGCT 855328 Query 149435 GTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCG 149494 || ||| ||||| || || | ||| || |||||||||||||| ||| Sbjct 855327 GT-CTTGGAGATTTGGGCACACACTTTGAGAGTTTCATAGATGCCCTCGATAGAGTCTTC 855269 Query 149495 CTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACAT 149554 |||||||| |||| || || ||| ||||||| ||| | | || ||||| ||| | Sbjct 855268 TTTCATGGTGAGCAAGAAACAGGAGGACATTTGGGGACGAGGTGTACCGGCATTGAATAA 855209 Query 149555 GGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCG 149614 || ||||| || |||||||| |||| | | ||| | | ||| | || | | Sbjct 855208 AGTAGGGCTTGCATGTGTAAAGAATTTTTCGGACATAAGGTTGTAAGTTTCAATGGCAGA 855149 Query 149615 GTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||| || || || || || || || ||||| || ||||| | || ||| || || || || Sbjct 855148 GTCGATATCTTCCCCGTGAATACCAATGGCCACACGCATAATCAAATGTTGAGGACGTTC 855089 Query 149675 CGCCACTTTGTTTCCA---ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAA 149731 || || ||| ||| ||||| | | ||| | ||| | |||||| | ||||| Sbjct 855088 TGCTACCTTG---CCATTGATTTTCAAAAGATAGGAGCGTTCCAAGGTCTTGAATCCAAA 855032 Query 149732 GTACTTGTAGTCAAAGTCGCG 149752 | ||||| |||| || || Sbjct 855031 AAAGTTGTACCCAAAATCACG 855011 >seq67 Length=1953875 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | ||| || || || | ||||| || || ||||||||||| || ||||||||| Sbjct 1481647 TCTTCCAACTGTTTACCGGCAAAGATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTG 1481706 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| |||||||| | | || | | ||||| || ||||| || | ||| | | Sbjct 1481707 TCTTGGATTTTTTGCTTCACATTATCGATGGAGTCGGAGGATTCCACTTCCAAGGTAATG 1481766 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || || ||||| |||||||| |||||| Sbjct 1481767 GTCTTGCCAGTAAGGGTTTTAACGAAAATTTGCATG 1481802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420231980560