Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28 163 7e-35 seq3 127 5e-24 seq2 127 5e-24 seq4 100 7e-16 seq17 95.1 3e-14 seq1 95.1 3e-14 >seq28 Length=432467 Score = 163 bits (180), Expect = 7e-35 Identities = 555/856 (65%), Gaps = 13/856 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||| |||||| ||||| || || ||||| | ||| | | |||||||| | | Sbjct 233467 ACTTTTTTGGGTTCAAGACACTGGAACGCTCGTATCTTTTGAAAATCAATGGCAAAGTGG 233526 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||||||||||||| || | | ||||| || | || || ||||| | |||||| Sbjct 233527 CTGAACGTCCTCAACATTTGATCATGCGTGTGGCCGTCGGCATCCATGGTGAAGATATTG 233586 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTA 110481 | ||| ||||||| || | | | ||||| | | ||||||| ||||| Sbjct 233587 ACTCTGCTATTGAAACCTACAACCTCATGTCCGAAAAGTACTTCACCCATGCTAGTCCTA 233646 Query 110482 CCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATT 110540 || |||| |||||||| ||| | || ||| | | || || |||||| || || Sbjct 233647 CCTTATTCAACGCAGGCACTCCTCGACCCCAACTCTCCTCCTG-TTTCTTGCTCACCATG 233705 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 || || || || || |||||||| || || |||| |||| ||| | ||||| || Sbjct 233706 AAAGAAGACTCCATCGAAGGTATCTACGAAACTCTCAAAGTGTGTGCCCAAATTTCCAAG 233765 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | | || || |||||| | || | || | ||||| | | ||| | | ||||| Sbjct 233766 ACGGCAGGTGGCATTGGTCTCAACATCCACAACATTCGTGCCACAGGCTCTTACATCGCG 233825 Query 110661 ACAGCGAAGGG-TGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | || || | || ||| ||| || |||| ||| | | ||||||||| | || || Sbjct 233826 GGAACCAACGGCTACTCCAA-TGGTATTCTTCCTATGCTTCGTGTCTTCAACAATACCGC 233884 Query 110720 AAAATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACC 110776 || ||| |||||||||| || | | ||| | |||||||| ||| | ||||| Sbjct 233885 TCGTTACGTGGATCAAGGTGGCAACAAACGCCCTGGTGCTTTTGCTATGTATTTGGAACC 233944 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 ||||||| | || || ||| ||||| || ||||| || ||| || || ||| Sbjct 233945 TTGGCATGCGGACATCTTTACCTTCTTGGATCTTCGCAAGAATGTTGGCAAGGATGAAAT 234004 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | || |||||| | |||||||| | ||||| | ||| | || ||||||||||| | Sbjct 234005 CCGTGCTCGTGATCTCTTTTATGCCCTCTGGATCCCTGATCTCTTTATGAAACGTGTGGA 234064 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 || |||||| ||||| | | ||||| | | | ||| || ||||| | Sbjct 234065 AGCGAATGGCGACTGGTCCTTGTTTTGTCCAAGTGAAGCGCGTGGGCTCCAAGATGTTTG 234124 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGC---AA 111013 ||| | || |||||| | || || |||||||| ||| |||||| | ||| || Sbjct 234125 GGGAGACGAATTTGAACAGCTCTATGAAAAATACGAACGGGAAGGC--CGTGCGCGTGAA 234182 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAAC 111073 || || || || || | |||| ||||| ||| | ||| |||||||| | Sbjct 234183 AC-CATGAAGGCGCAGAAATTGTGGTATGCTATCCTGGAAGCTCAAACGGAAACTGGGAA 234241 Query 111074 TCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAAC 111133 |||| ||| | || || ||| | || || ||||| |||||| || || || || Sbjct 234242 CCCTTTTATGCTCTACAAGGATGCTTGCAACCGGAAATCAAATCAACAAAACTTGGGCAC 234301 Query 111134 AATTAAGTCTAGTAAT 111149 || || | |||||| Sbjct 234302 CATCAAATGCAGTAAT 234317 >seq3 Length=1295254 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| |||||||||| ||| || |||||| | ||||| ||||| ||| ||||| Sbjct 477237 CATTTGTCTGACAATGATGTGGTGCTTTTCAATCGACAACCCTCACTCCATCGTTTGTCT 477296 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || ||||| ||| | |||||| | || | || || ||||| || | | ||| Sbjct 477297 ATCATGGCGCATTTTGCCAAAGTCATGCCTTGGCGTACTTTCCGATTCAACGAATGTGTG 477356 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 || | ||||| ||||||||||||||||| |||||||||||||||||| |||||||| || Sbjct 477357 TGCTCTCCTTACAATGCGGATTTTGATGGTGATGAAATGAATATGCATTTACCTCAAACA 477416 Query 305489 AAGGTTACAATGACTGAA 305506 | | ||| | ||||| Sbjct 477417 CAAGAAGCAAAGGCTGAA 477434 >seq2 Length=1684868 Score = 127 bits (140), Expect = 5e-24 Identities = 455/706 (64%), Gaps = 9/706 (1%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 ||| |||||| ||||| || | ||||| | ||| | | |||||||| || | Sbjct 855027 ACTTTTTTGGATTCAAGACCTTGGAACGCTCCTATCTTTTGAAAATCAATGGCAAGGTAG 855086 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||||||||||| || || | ||||| || ||||||||||| || | ||||| Sbjct 855087 CAGAACGTCCTCAACATTTGATTATGCGTGTGGCCATTGGTATTCACGGGGAAGATATCG 855146 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCA--TGCTACTCC 110479 | ||| |||||| ||| | | || || || || || | || ||| | || Sbjct 855147 ACTCTGCCATTGAAACTTACAACCT--TATGTCCGAAAAATTCTTTACACATGCAAGCCC 855204 Query 110480 TACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAA 110538 ||| |||| || || || || | | ||| || | || || |||||| || | Sbjct 855205 TACTTTATTCAATGCCGGTACACCTCGTCCCCAAATGTCCTCCTG-TTTCTTGCTCACCA 855263 Query 110539 TTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTA 110598 | || || || ||||| || || || ||||| |||| |||| ||| | || || | Sbjct 855264 TGAAAGAAGACTCTATCGAGGGCATCTATGAAACTCTCAAAGTGTGTGCCCAAATCTCCA 855323 Query 110599 AAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCG 110658 | | | || || |||||| | || | || ||||||| | | || | | || | Sbjct 855324 AGACAGCAGGTGGCATTGGTCTCAACATCCACAATATTCGTGCTACGGGTTCTTACATTG 855383 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || || ||| | ||| || |||| ||| | | || |||||| |||| | Sbjct 855384 CTGGTACAAATGGCTATTCCAATGGTATTCTTCCTATGCTGCGTGTTTTCAACAACACAG 855443 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| | ||||||||||| | | | || | ||||| || ||||| |||| Sbjct 855444 CCCGTTATGTCGACCAAGGTGGTAACAAACGTCCTGGTGCCTTTGCCATGTATCTTGAAC 855503 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAAC 110835 |||||||| | || || ||| || || || || || || ||| || || ||| Sbjct 855504 CTTGGCATCCTGACATCTTTACCTTTTTGGATCTCCGCAAGAATGTTGGCAAGGACGAAA 855563 Query 110836 AAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTC 110895 | || |||||| | |||||||| |||||||| | ||| | || |||||||||||| Sbjct 855564 TCCGTGCTCGTGATCTCTTTTATGCTCTGTGGATTCCCGATCTCTTTATGAAACGTGTTG 855623 Query 110896 AAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 ||| || ||| ||||| | | || || | | |||||| || ||| || | Sbjct 855624 AAGCCAACGGCGAATGGTCCATGTTTTGCCCAAGTGAGGCGCCTGGTTTACATGAGGTCT 855683 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 || | || || |||| || || ||||| |||||| ||||| Sbjct 855684 GGGGTGATGAATTCGAAGCTCTCTATGAAAAGTATGAACGCGAAGG 855729 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 113265 TGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGAT 113324 |||||||| |||||| || | |||||||||||||| || ||||| ||||| ||| Sbjct 995160 TGGGAAATCTCGCAACGGGTGATCATTGATATGGCTGCTGACCGTGGGGCATTTATTGAT 995101 Query 113325 CAATCTCAGTCGATGAA-CTTATTTATGCCGGACACCTCACCAGATAAGGTGACATCTGC 113383 |||||||| |||||||| ||| | || || || | | | ||| |||| || Sbjct 995100 CAATCTCAATCGATGAATCTTTTCACTGGCGAAC-CTACTTATGGCAAGTTGACCTCGAT 995042 Query 113384 TCTATTTTACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTTGCG 113434 | ||||| | |||||| || || |||||||| || ||||||||||| || Sbjct 995041 GCATTTTTATGCCTGGAAGAAGGGATTAAAAACTGGAATGTATTATTTACG 994991 >seq4 Length=1266665 Score = 100 bits (110), Expect = 7e-16 Identities = 158/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| || ||||| || || || |||||| | ||||||| || || | || | Sbjct 714665 TTCCTTGTATCAAAAAAAAGGCGGATTGGGCTTTCCGATGGATT--AG-TGGTAACG--A 714719 Query 131847 AT--TTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGC 131904 || ||| || | | ||||| ||||| ||| ||| ||||| || |||||||| ||||| Sbjct 714720 ATCATTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTGGAAGGCATCTTCTTTTCCGGTGC 714779 Query 131905 TTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAA 131964 || ||||||| ||||| ||||| ||||| ||||||||||| | |||| ||||| Sbjct 714780 CTTTGCCTCTATCTTCTGGCTCAAGAAACGTGGTTTGATGCCTGGGTTGACATTCTCCAA 714839 Query 131965 TCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | || | ||| | || |||| | |||||||| ||||| Sbjct 714840 TGAACTGATCAGTCGTGACGAAGGTCTCCATACTGACTTTGC 714881 >seq17 Length=590484 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 113256 AAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTGCAGATCGTGGCAAG 113315 ||||| | |||||||| ||||| || | ||||| ||||||||||| ||||| Sbjct 156764 AAGACGGTGTGGGAAATATCTCAACGAGTGATCATTGACATGGCTGCAGACCGTGGTGCA 156705 Query 113316 TTTATCGATCAATCTCAGTCGATGAACTTATTTA-TGCCGGACACCTCACCAGATAAGGT 113374 |||||||||||||||||||| ||||| || |||| || | || | | | ||| | Sbjct 156704 TTTATCGATCAATCTCAGTCCATGAATTTGTTTACTGGTGAAC-CTACGTATGGCAAGTT 156646 Query 113375 GACATC--TGCTCTATTT-TACGGCTGGAAAAAAGGTTTAAAAACAGGTATGTATTATTT 113431 |||||| ||| |||| || | ||||||||||| || || || || ||||| || || Sbjct 156645 GACATCAATGC---ATTTCTATGCATGGAAAAAAGGGTTGAAGACTGGGATGTACTACTT 156589 Query 113432 GCGAACACGTCCT 113444 |||| || | ||| Sbjct 156588 GCGATCAAGACCT 156576 >seq1 Length=3895514 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 ||||| || |||||| ||| |||||||| ||||| || ||||| || | ||||| Sbjct 3274599 CTTGTGGCCTTTGCTGCTGTGGAAGGTATCTTCTTCTCTGGTGCCTTTGCCTCCATCTTC 3274658 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 ||||| ||||| ||||| ||||||||||| | | || |||||| |||| |||| | Sbjct 3274659 TGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACCTTCTCCAATGAATTGATCTGTCGT 3274718 Query 131981 GATGAAGCATTGCATACTGAATTTGCT 132007 || |||| | || ||||| |||||| Sbjct 3274719 GACGAAGGTCTTCACACTGACTTTGCT 3274745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | || ||||||||| ||||||||| | || || ||||| ||||||| |||| Sbjct 2119824 TCATCATACTACCAGCATTGTCGAATTCAC-CACAGTACGCAGGTGCAGAAAATAGAGTA 2119766 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCAC-GTAT 167356 || |||| || || ||| ||||| ||||||||||||||||||| ||| || | | | Sbjct 2119765 ACCAATTGTCGCTTTGCAAAGAATTCGTAACCATCTTCAACAACTTGATGCGCCCGGCAG 2119706 Query 167357 TACAAGTTCAACTCCTAtttttttAAGAAAATTAGTTAAAGCACGT--AATCCAAATTTA 167414 ||| | ||| || | ||||| ||| ||| || || || |||| |||||||| || Sbjct 2119705 ATCAAATCCAAATCATGTTTTTGTAA-AAACTTGGT--AACAACGTCAGATCCAAATGTA 2119649 Query 167415 TAA 167417 || Sbjct 2119648 AAA 2119646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811370632334