Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Absidia_20repens_20[genbank_20GCA_5F002105175.1_202017-04-20] 94 sequences; 47,422,896 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq67 132 3e-26 seq34 123 2e-23 seq15 98.7 7e-16 seq5 96.9 2e-15 seq22 91.5 1e-13 seq8 82.4 5e-11 >seq67 Length=1953875 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || ||||| || ||||| |||||||| || || Sbjct 1415665 ACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 1415724 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||||||| || || |||||||||||||| |||||||| | || Sbjct 1415725 GAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGG 1415784 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || ||| |||| ||| | | ||| |||||||| Sbjct 1415785 AATACCTTCCTTATCTTGAATCTTTTGCTTC-ACATTGTCGATAGAGTCAGATGATTCCA 1415843 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || |||||||| |||||| Sbjct 1415844 CTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415893 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || ||||| || ||||| |||||||| || || Sbjct 1415893 ACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 1415952 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||||||| || || |||||||||||||| |||||||| | || Sbjct 1415953 GAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCGGGGGG 1416012 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || ||| |||| ||| | | ||| |||||||| Sbjct 1416013 AATACCTTCCTTATCTTGAATCTTTTGCTTC-ACATTGTCGATAGAGTCAGATGATTCCA 1416071 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || |||||||| |||||| Sbjct 1416072 CTTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1416121 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| || ||||| ||||||||||| || Sbjct 1415438 CCACCACGAAGACGAAGCACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAATCTGAC 1415497 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||||||| || ||||| ||||||||||| ||||| || | || Sbjct 1415498 AAAGTACGGCCATCTTCCAATTGCTTACCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 1415557 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||| || ||||| ||||| ||| | | ||| ||||||||| Sbjct 1415558 ATACCTTCCTTGTCTTGAATCTTTTGTTT-AACATTGTCGATAGAGTCAGATGATTCCAC 1415616 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || || || || || |||||||| |||||| Sbjct 1415617 TTCCAGAGTAATAGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCATA 1415665 Score = 131 bits (144), Expect = 1e-25 Identities = 171/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || ||||| || ||||| |||||||| || || Sbjct 1481346 ACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGA 1481405 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || |||||||| || |||||||||||||| |||||||| | || Sbjct 1481406 GAGAGTGCGGCCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGG 1481465 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| ||| || |||||| |||| ||| | | ||| ||| || Sbjct 1481466 AATACCTTCCTTGTCTTGAATCTTTTGTTTC-ACATTGTCGATAGAGTCAGAGCT---TT 1481521 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || || || || || || || || |||||||| |||||| Sbjct 1481522 CCACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 1481574 Score = 116 bits (128), Expect = 2e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| ||||| || ||||| ||||||||||| || Sbjct 1481118 ACCACCACGGAGACGGAGCACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGA 1481177 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||||||| || || ||||| || | ||| || ||||| | || Sbjct 1481178 AAGAGTGCGGCCATCTTCCAATTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGAGG 1481237 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| ||| || |||||| |||| ||| | | ||| ||| || Sbjct 1481238 GATACCTTCCTTGTCTTGAATCTTTTGTTTC-ACATTGTCAATTGAGTCAGAGCT---TT 1481293 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | || || || || || || || || || |||||||| |||||| Sbjct 1481294 CCACTTCCAATGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCATA 1481346 Score = 100 bits (110), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || ||||| || ||||| |||||||| || || Sbjct 1416121 ACCACCACGGAGACGGAGCACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGA 1416180 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || ||||||||||| || ||||| || | ||| || || ||| | || Sbjct 1416181 AAGAGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATGAGACGTTGTTGGTCTGGAGG 1416240 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| ||||| |||| ||| | || |||| ||||||| Sbjct 1416241 AATACCTTCCTTATCTTGGATTTTTTGTTT-GACATTGTCAATGGAGTCGGAGGATTCCA 1416299 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | || || || || || || | || || || || || ||||| |||| Sbjct 1416300 CTTCCAAGGTAATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT-GTTG 1416352 >seq34 Length=2241197 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 33517 TCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAA 33576 ||||||||||||| | |||||| ||||| |||| || || ||||| || |||||| Sbjct 1643118 TCGTCACCACCTCGTAGACGTAATACCAAGTGTAATGTTGATTCCTTTTGAATATTGTAA 1643059 Query 33577 TCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 || || | || || | || |||||||| || || ||||| |||| ||| |||||||| Sbjct 1643058 TCAGATAAGGTACGCCCATCTTCCAATTGCTTCCCAGCAAAGATCAGACGTTGCTGATCG 1642999 Query 33637 TGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA 33695 | || | |||||| ||||| ||| || ||||| || | ||| | | ||| || Sbjct 1642998 GGAGGGATACCTTCCTTGTCTTGAATCTTTTGTTT-GACGTTGTCGATAGAGTCAGAGGA 1642940 Query 33696 TTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||| || | || || ||||| ||||| | || || |||||||| |||||| Sbjct 1642939 TTCCACTTCCAAAGTAATAGTTTTGCCTGTAAGGGTCTTGACAAAGATTTGCATA 1642885 >seq15 Length=645780 Score = 98.7 bits (108), Expect = 7e-16 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| |||||| || ||||| |||||||| || || Sbjct 322208 ACCACCACGAAGACGGAGAACCAAATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 322267 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||||||| || || || ||||||||||| |||||||| | || Sbjct 322268 AAGGGTACGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGG 322327 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCA 33682 | |||||| || || ||||| || ||| |||| |||| Sbjct 322328 AATACCTTCCTTATCTTGGATTTTTTGCTTC-ACATTGTCA 322367 >seq5 Length=1173598 Score = 96.9 bits (106), Expect = 2e-15 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| || ||||| |||||||| || || Sbjct 909382 ACCACCACGGAGACGGAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGA 909323 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||||||| || || || ||||||||||| |||||||| | || Sbjct 909322 GAGAGTACGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCAGGAGG 909263 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||| ||||| ||| || || || |||| ||| Sbjct 909262 AATACCTTCCTTGTCTTGAATCTTTTGCTT-GACATTGTC 909224 >seq22 Length=518773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| || ||||| |||||||| || || Sbjct 75922 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 75863 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||||||| || || |||||||||||||| |||||||| | || Sbjct 75862 CAAAGTGCGACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGCTGATCAGGAGG 75803 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||| ||||| ||||| || || |||| ||| Sbjct 75802 AATACCTTCCTTGTCTTGGATTTTTTGCTT-GACATTGTC 75764 >seq8 Length=1007018 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| || ||||| |||||||| || || Sbjct 757488 ACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCAGA 757547 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||||||| || || || ||||||||||| ||||| || | || Sbjct 757548 GAGAGTACGGCCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGGTCAGGAGG 757607 Query 33642 CACACCTTCTTTGTC 33656 | |||||| || || Sbjct 757608 AATACCTTCCTTATC 757622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703623428480